Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07596 ATGGCTGAGACAAATACAGTTGAAGGGATTTTGGATTTTTTGAGGAGGAACCGGTTCACACGAGCTGAGGCAGCTTTCCGAAGTGAGCTCAATAACTGCTCTGATGTGAATGGGTTCCTACAGAAGCTTACCTTGGAAGAAAAGAACTTGTGTGATTTGCCGCAGAGTGATAAGGGGAAGTTAGTGGTAGAAAATCGAGGGGTGGATTCTCGTGATAATGTTGAAGTTTCTAAAGAATTGATTGTGAAGGAGATTGAGTGTGGTACCGGTAGAAATACTACTGAGAGCAAATGGAAAAATGCCACTCCTGCTGAGGAAAGGAATAAATCTAATGAAGTTGTTGGAACGAGTGGGACGAATTTCACTTTCTTGAAGAGTTCAGAGGACAGTGTGTTTGATTTACAGTCGTGGAAGATCAATCAAAATGATGGTGGAAGCAAGGCTAGTAATACTTTGAAGGCTTCAAATTCTCAGCAATCAAAAAATCAAACGAGTGAGACCTTTGATGCAGCCAACAGTAATGTAAAAACCGCAGAGGAAAATAGTGTGTCCGCCGAGAAAAAATCACCTTGCGTTGGAAGTAGTAGTGGTAAAGCCTCTACGGATCCAAAGTTTAACATTGCACAAAACAAAGAATCTAAGGAAATTGATCGGCAGCAACTTAAATTTAATAGTTCGTCACTTAAAGAGAACTTGGCAGATAACGTCTTGTTGAGAGCTGACGAGAATGCCAATTCATCTTCTGACGTATGGAAAGATTGTTCCATCAAGACCGTTTTCCCTTTCCCAAAGGGGGATGTGTCTACAAGCTACAGCAGTTCAAATTACTCTGAAAAAGTTGATGAAAAGAGAAAGTCAGAAATCAGTGATGCGAGGGCTTATATAAAAGAGCAGGTGGATGAAGTCGGGAGAGCTTTTTACTTGGCGAAATTGCAAGGAAGTTCTGAACAAAATAACATTGGTACCTTAACTTTTCCTATTGCACCAGAGAAGCATAAGGAAGAGTATCCAAGGCTTCCACCTGTAAAAATTAAGTCTGAAGATAAGCCCTTGACTATTAATTGGAACGAGAAGTTTGAATCTGATGGATTGGCTGCAAAGCTCGCTAGTGCTGACAGCAACTTACTTATTGGATCATATCTGGATGTCCCTATTGGACAAGAAATTAAAAATGCAGGTATGAGGAAGGCTACAGGGGGAAGTTGGCTGTCCGTAAGTCAAGGAATATCAGAGGATACATCTGATCTTGTATCAGGTTTTGCTACAGTTGGTGATGGGTTGAGCGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGATGAATATGACGATGACGACGATGTCGGATACATGCGACAACCTATTGAGGATGAGGCCTGGTTTCTGGCACATGAAATTGATTACCCTAGTGACAATGAAAAGGGGACTGGACATGGAAGTGTTCCTGATCCTCAGGAAAGAGGTCAAGCCAAAGATGATGATGATGATCAATCTTTTGCTGAAGAAGATTCTTACTTCTCTGGAGAGCAATATCTTCAAGCAAAGAATGTTGAGCCTGTCACAGGTTCAGATGATCCTATCGGTATAACGGTTACTAATATGTATGGAAGGGCTAATGGCAATGATTTAATGGCTCAATATGACGGAGAACTGATGGATGTAGAAGAGCTGAATCTGATGCACGCAGAACCCGTCTGGCAAGGCTTTGTCCCTCAGACAAATGATCTAATCATGTTGGGAGATGGAAAAGTTCTGAATCATAGTGGAAGATCACGGCTTGAAGAAATGGAAGATGATCAGCACGGTTCAGTTAGGTCAATCGGGGTGGGTTTCAACAGTGATGCTGCTGATATCGGCAGTGAAGTGCATGGAAGTTTTATTGGTGGTAGTAGTGAAGGGGATTTAGAATATTTTCGTGATCGTGATAGTGGACTTGGGGGATCCAAACACTCTCATCGTGATTTTGTTAAGAATTCTATGGACAAATCATTCAAAAATAAGAAAAATGATTTGATTGAGTCGAATAAATATGTCATTGGAGGTCATAAAGATGCACACTCACAAATAAAAACACATACCGATGGCAACTTTTCATTCCCTCAATCTCTTAATGATAGCCAGATAATTCAAGGTGGTTCCAGTAAGACTCCATGGTCAAATAATTGTAATAACGCGGATGAAACCAATGACTGTATTAATGCTTTCGAGGGATCTGATGAAATGCTTTCATCTTGGAGGCAGAAGAGCAGTGATTCTTCACCCGAGAAAAGTTCTAGGGATGAGAATAACGCTAACGCGGCTAGATCCTCAAACTCTTCCCCAACTACTGTCGATGATTATGTGTACGCTGATAAAGAGCGTGTCAAGCTAGAAAAAGACGATGAAGAGGTTGACATTACAAGGGAAGATGATTTAGGCGTATCACAAGAAGATGAAGAGATTGCTGCTGTGCAAGAGCAGGTAAGGCAGATAAAGGCTCAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGCCGCTATCATGTCACTGAGTATCTGGGATCTGCAGCATTCAGTAAAGCAATTCAAGCTCATGACCTGCATACGGGTGTGGATGTCTGTATTAAAATTATAAAGAACAACAAGGATTTCTTTGATCAAAGCCTCGATGAGATCAAACTCCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTACCACATTTTGCGGTTATATGATTACTTCTACTATAGAGAACATTTGTTAATAGTATGTGAGCTACTCAAAGCCAACTTATACGAGTTTCATAAATTTAACAGAGAATCAGGAGGGGAAGTCTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAATGTTTGGAAGCACTTCAGTATTTACATAACCTTGGACTAATACATTGTGACTTGAAGCCGGAGAATATTTTGGTTAAAAGCTACAGCCGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAGATCACCTTTGCTCATATGTTCAGTCCAGGTCCTATCGTGCTCCTGAGGTTATTCTCGGGCTTTCGTATGACAAGAAGATTGATATCTGGTCCCTTGGATGCATCCTGGCAGAACTTTGTACTGGCAATGTCTTATTCCAAAATGATTCCCCCGCAACATTACTAGCTAGAGTAATTGGGATCATTGGTCCAATTGGTCAAAGTATGCTAGCAAAAGGACGGGATACATACAAGTACTTCACAAAAAATCACATGCTTTATGAAAGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCGAAAAAGACATCCTTGAGGCATAGATTACCGATGGGGGACCAAGGTTTCATTGACTTTGTTGCTCATTTGCTCGAGGTTAACCCGAAGAAGCGGCCTTCGGCATCCGAGGCTCTAAAGCACCCGTGGTTATCATACCCTTACGAACCCATATCATCTTGA 3534 0.41 MAETNTVEGILDFLRRNRFTRAEAAFRSELNNCSDVNGFLQKLTLEEKNLCDLPQSDKGKLVVENRGVDSRDNVEVSKELIVKEIECGTGRNTTESKWKNATPAEERNKSNEVVGTSGTNFTFLKSSEDSVFDLQSWKINQNDGGSKASNTLKASNSQQSKNQTSETFDAANSNVKTAEENSVSAEKKSPCVGSSSGKASTDPKFNIAQNKESKEIDRQQLKFNSSSLKENLADNVLLRADENANSSSDVWKDCSIKTVFPFPKGDVSTSYSSSNYSEKVDEKRKSEISDARAYIKEQVDEVGRAFYLAKLQGSSEQNNIGTLTFPIAPEKHKEEYPRLPPVKIKSEDKPLTINWNEKFESDGLAAKLASADSNLLIGSYLDVPIGQEIKNAGMRKATGGSWLSVSQGISEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGQAKDDDDDQSFAEEDSYFSGEQYLQAKNVEPVTGSDDPIGITVTNMYGRANGNDLMAQYDGELMDVEELNLMHAEPVWQGFVPQTNDLIMLGDGKVLNHSGRSRLEEMEDDQHGSVRSIGVGFNSDAADIGSEVHGSFIGGSSEGDLEYFRDRDSGLGGSKHSHRDFVKNSMDKSFKNKKNDLIESNKYVIGGHKDAHSQIKTHTDGNFSFPQSLNDSQIIQGGSSKTPWSNNCNNADETNDCINAFEGSDEMLSSWRQKSSDSSPEKSSRDENNANAARSSNSSPTTVDDYVYADKERVKLEKDDEEVDITREDDLGVSQEDEEIAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGVDVCIKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQYLHNLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIGQSMLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07596 1177 Coils Coil 161 188 - -
Vifa1g07596 1177 SMART serkin_6 866 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07596 1177 Pfam Protein kinase domain 866 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07596 1177 Gene3D Transferase(Phosphotransferase) domain 1 920 1168 - -
Vifa1g07596 1177 ProSitePatterns Serine/Threonine protein kinases active-site signature. 992 1004 IPR008271 GO:0004672|GO:0006468
Vifa1g07596 1177 Coils Coil 808 838 - -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 92 116 - -
Vifa1g07596 1177 FunFam Putative serine/threonine-protein kinase dyrk2 860 947 - -
Vifa1g07596 1177 SUPERFAMILY Protein kinase-like (PK-like) 855 1170 IPR011009 -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 743 783 - -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 187 207 - -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 764 779 - -
Vifa1g07596 1177 FunFam Serine/threonine-protein kinase ppk15 945 1169 - -
Vifa1g07596 1177 CDD PKc_DYRK_like 866 1168 - -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 142 180 - -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 689 723 - -
Vifa1g07596 1177 Gene3D Phosphorylase Kinase; domain 1 860 947 - -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 142 213 - -
Vifa1g07596 1177 PANTHER DUAL SPECIFICITY PROTEIN KINASE 401 1168 - -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 469 502 - -
Vifa1g07596 1177 MobiDBLite consensus disorder prediction 692 723 - -
Vifa1g07596 1177 ProSiteProfiles Protein kinase domain profile. 866 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07596 Vifa-Chr1 1178427367 1178434020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07596 865 1163 MAP Kinase Gene Family AT5G19010 31.975 8.34e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vifa1g07596 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07596 - - mtr:25496682 2158.64