Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07587 ATGGCTGAAAATGGCGGCCAAAGGAAAAGGAACTGTTTCAGAGGTATTGATACTCGCCATGGTTTTACTGGAAATCTCTACAAAGCTCTCACTGACAACGGAATACACACCTTCTTTGATGATGATAGTCTTCAAGGAGGGCATGAAATCACACCATCACTTGTAAAGGCTATTGAAGACTCTAGAATTTTTATTCCTGTGTTTTCTATCCACTATGCCTCTTCATCCTTTTGTTTGGATGAACTTAATGGGAGTTACGGTGAAGCACTGGCTAAGCACGAAGCCAGGTTCCAAGGTAACAAGGATAACATGGAGAGGTTGAAAAAATGGAAATTAGCTCTTAACCAAGCCGCTAATTTGTCTGGCTACCATTATACTCCTGGATACGAATACAAGTTTATCAAGGGGATAGTCAAATACATCTCCAACAAGATCAATCGTGTTTCTTTACACGTTGCTGAGTACCCGGTCGGATTACACTCGCAAGTACTGCAAGTGAAATCGCTTTTTGATAATAGATATGATGATGGGGTCCTCATGGTAGGAATTTATGGGGCCGGAGGCTTGGGTAAATCAACACTTGCAAGAGCAATTTATAATTTTGTTGCCGATCAATTTGAAGATATATGTTTCATTCATAATGTGAGAGAGAATTCAAGTCAAAATAACTTAAAACATCTCCAGGAGGAGCTCCTTTTGAAAACAGTTGGATTAGACATTACGTTAGGAGATGTTAGTGAGGGAATTCCAATCATAAAGGAAAGGCTACATAGAAAGAAAATTCTTTTGGTTCTCGATGACGTTGACAAACTGAAGCAACTGCAGGTTTTGGCTGGAGGACTTGATTGGTTTGGTGCGGGTAGCATAGTCATCATTACTACTCGAGACAAGCACTTATTAACAAGTCATGGGATACAAAGAACATATGTAGTAAAAGAGTTAAATGGGAAAGAAGGTCTTGAATTGTTGAGGTGGATGGCTTTCAAAAATAACAAAGTTCATTCAAGTTATGAGGATGTTTTAAACCGGGCTGTTGCTTATGCTTCTGGCTTTCCATTAGTTTTAGAAATAGTGGGTTCCAATTTGTTTGGAAAGCGCGTAGAAGAATGGAAGTATACATTAGATGGGTATGAAAAGATTCCCAATAAAGAGATCCAAAAGATACTTAAAATAAGCTTTGATGCTTTGGAGGAAGAGGAACAAAGTGTCTTCCTAGATATTGCTTGTTGCTTTAAAGGATGTAGTTTGACAGAGGTTGAAGAGATACTCCATGCTCAGTATGGTGGCTCCATGACACATCGAATTCAAGTATTGGCAGAAAAATCTCTCATTAAGATTGGTCATTTCGAGCAGAGTTGTATTTGTAATGTGACATTACATGACTTGATAGCGGAAATGGGTAAAGAAATTGTCCGACAAGAATCACCCAAAAAACCTGAAAAACGCAGTAGGTTGTGGTTCCGAGAAGATATAATTCAAGTGTTAGAAAAGAATGCGGAAAATAGTGATATTGAAATCATATCTCTGGATTGCGGCTCATCTGAAGCAGCAATAGATTGGAACGGAATGGCTTTCGGGAAGATGAAAAGGCTCACGACACTTATTATTAAAAGTGATAATTTTTCCAAAGGCTCTATAGATTTTCCAAGTAATTTGAGAGTATTAAAATGGCAAAAATATCACTTGCAGTGTATTCCGTACTGTTTTTTCAACAAGATGTTTGTGAATATAAAGGTTTTGAAATTTGACAATTGTGAATATTTAACACAAATATCAGATGTCTCTTGTCTTCCAAATTTAGAGAGTTTTTCATTTGAAAATTGTGAGAATTTAATTACAATTCACAGTTCGATAGGATTGCTGAATAAACTTGAGTTCTTGAATGTCAGTGGTTGCATTAAGCTCAAAAGTTTTCCACCATTGATGTTGGCTTCTCTTAAAAAACTGAAACTTTCACATTGTAAGAGTCTACAAAGTTTTCCAGAAATATTAGGCAAGATTGAAAATATAGAAGATATTGATATTCGGGAAACTTCCATAGAGGACTTTCCCGTTTCATTTCAAAATCTCACCGGACTTATTTCGATATCTATAAAGGGACATGGGGTGTTTAGGTTACCAAGTTTCATTTCAAAGATGCCAAAATTCTCAAGTATTTGGGTTCACCAATATCATTTCATAATGCCAAGACAGTTTTCCACAATGTCTTCAAATGTGAAATGGCTTTATCTCTATGAAAGCAACCTCTCAGTCTCAGATGAATACCTTCCAATAGTTCTCACTTGGTTTTCTAATGTGGAAGAATTAAACCGAGTTGGAGTCAATTTCAAAATTCTTCCGGAATGCCTCAAAGAACATTGTCCTCTACATGAACTTGGATTGTTTAGTTGCAAGTCTCTTGATGAAATAAAAGGGATTGGGCTAAATCTTGTTATTCTGTCTGCATTAGACTGCAAATCACTGAATTCCTCTAGTAGAAGAAGTATGCTAGGGAATCAGGAACTACATGAGGGTAGAACTACCCATTTTTGTTTTCCACTAGGAAGTGAGAGGATTCCGGAGTGGTTTGAGCACCGAAGCATTGGACCAACGAGAATTTCTTTCTGGTTTCGTAACAAGATCCCTTCCATAGCTCTCTTCTTTTCTACTAAATGGATGTATGACCACAATGAAAAGCTTCAGTTAAGAGTAAATTTGTTCGTCAATGGCGGCTATAAATATACTTTTTCTCTTAAGGAATTTACTGAGGTTTCCTTGTTAGAAACGAATCATATATATCTAATATATATTGATTTGGAAGAACTAGTTCACCGCTCGGAAAACTATGAAAAACTTGAATCTAAACTAAAAGAAGCACTTTTAAAAAATGAATGGATCCATATGGAGCTTAAGTTAGAGAGCTATTCGAAGTTAGCAGATGATAACGATGAGATGAGGAAATCGCTCCATACAAAATTTGGAATCCACGTGTTCAAAGAGGAAAACAACTTAGAAGATATCGAATTCACCAATCCTTATAGAACGAGAAAATCATATTAA 3039 0.3662 MAENGGQRKRNCFRGIDTRHGFTGNLYKALTDNGIHTFFDDDSLQGGHEITPSLVKAIEDSRIFIPVFSIHYASSSFCLDELNGSYGEALAKHEARFQGNKDNMERLKKWKLALNQAANLSGYHYTPGYEYKFIKGIVKYISNKINRVSLHVAEYPVGLHSQVLQVKSLFDNRYDDGVLMVGIYGAGGLGKSTLARAIYNFVADQFEDICFIHNVRENSSQNNLKHLQEELLLKTVGLDITLGDVSEGIPIIKERLHRKKILLVLDDVDKLKQLQVLAGGLDWFGAGSIVIITTRDKHLLTSHGIQRTYVVKELNGKEGLELLRWMAFKNNKVHSSYEDVLNRAVAYASGFPLVLEIVGSNLFGKRVEEWKYTLDGYEKIPNKEIQKILKISFDALEEEEQSVFLDIACCFKGCSLTEVEEILHAQYGGSMTHRIQVLAEKSLIKIGHFEQSCICNVTLHDLIAEMGKEIVRQESPKKPEKRSRLWFREDIIQVLEKNAENSDIEIISLDCGSSEAAIDWNGMAFGKMKRLTTLIIKSDNFSKGSIDFPSNLRVLKWQKYHLQCIPYCFFNKMFVNIKVLKFDNCEYLTQISDVSCLPNLESFSFENCENLITIHSSIGLLNKLEFLNVSGCIKLKSFPPLMLASLKKLKLSHCKSLQSFPEILGKIENIEDIDIRETSIEDFPVSFQNLTGLISISIKGHGVFRLPSFISKMPKFSSIWVHQYHFIMPRQFSTMSSNVKWLYLYESNLSVSDEYLPIVLTWFSNVEELNRVGVNFKILPECLKEHCPLHELGLFSCKSLDEIKGIGLNLVILSALDCKSLNSSSRRSMLGNQELHEGRTTHFCFPLGSERIPEWFEHRSIGPTRISFWFRNKIPSIALFFSTKWMYDHNEKLQLRVNLFVNGGYKYTFSLKEFTEVSLLETNHIYLIYIDLEELVHRSENYEKLESKLKEALLKNEWIHMELKLESYSKLADDNDEMRKSLHTKFGIHVFKEENNLEDIEFTNPYRTRKSY 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07587 1012 SMART AAA_5 177 314 IPR003593 GO:0016887
Vifa1g07587 1012 Pfam TIR domain 12 83 IPR000157 GO:0007165
Vifa1g07587 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 407 IPR027417 -
Vifa1g07587 1012 Gene3D - 11 82 IPR035897 -
Vifa1g07587 1012 SUPERFAMILY "Winged helix" DNA-binding domain 383 496 IPR036390 -
Vifa1g07587 1012 PRINTS Disease resistance protein signature 180 195 - -
Vifa1g07587 1012 PRINTS Disease resistance protein signature 641 657 - -
Vifa1g07587 1012 PRINTS Disease resistance protein signature 255 269 - -
Vifa1g07587 1012 PRINTS Disease resistance protein signature 348 362 - -
Vifa1g07587 1012 Pfam NB-ARC domain 166 392 IPR002182 GO:0043531
Vifa1g07587 1012 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 123 IPR035897 -
Vifa1g07587 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 686 IPR044974 GO:0006952
Vifa1g07587 1012 ProSiteProfiles TIR domain profile. 5 145 IPR000157 GO:0007165
Vifa1g07587 1012 Gene3D Ribonuclease Inhibitor 669 835 IPR032675 -
Vifa1g07587 1012 Coils Coil 932 952 - -
Vifa1g07587 1012 Gene3D Ribonuclease Inhibitor 508 668 IPR032675 -
Vifa1g07587 1012 SMART till_3 12 120 IPR000157 GO:0007165
Vifa1g07587 1012 Gene3D - 313 397 IPR042197 -
Vifa1g07587 1012 SUPERFAMILY L domain-like 517 823 - -
Vifa1g07587 1012 Gene3D - 145 309 IPR027417 -
Vifa1g07587 1012 Gene3D - 83 144 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07587 Vifa-Chr1 1177082387 1177086230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07587 157 687 WRKY Transcription Factor Family AT5G45050 30.769 1.83e-61 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07587 - - cam:101500791 1088.56