Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07586 ATGCCTCTTCATCCTTTTGTTTGGATGAACTTGTTCACATCATTCACTGCTTCAAGACAAAAAAAACGTCTCATTTTGCCTGTTTTCTATGGTGTGGAACCTTCTCACGTGCGACATCAGAATGGGAGTTACGGTGAAGCACTGGCTAAGCACGAAGCCAGGTTCCAAGGTAACAAGGATAACATGGAGAGGTTGAAAAAATGGAAATTAGCTCTTAACCAAGCCGCTAATTTGTCTGGCTACCATTATACTCCTGGATACGAATACAAGTTTATCAAGGGGATAGTCAAATACATCTCCAACAAGATCAATCGTGTTTCTTTACACGTTGCTGAGTACCCGGTCGGATTACACTCGCAAGTACTGCAAGTGAAATCGCTTTTTGATAATAGATATGATGATGGGGTCCTCATGGTAGGAATTTATGGGGCCGGAGGCTTGGGTAAATCAACACTTGCAAGAGCAATTTATAATTTTGTTGCCGATCAATTTGAAGATATATGTTTCATTCATAATGTGAGAGAGAATTCAAGTCAAAATAACTTAAAACATCTCCAGGAGGAGCTCCTTTTGAAAACAGTTGGATTAGACATTACGTTAGGAGATGTTAGTGAGGGAATTCCAATCATAAAGGAAAGGCTACATAGAAAGAAAATTCTTTTGGTTCTCGATGACGTTGACAAACTGAAGCAACTGCAGGTTTTGGCTGGAGGACTTGATTGGTTTGGTGCGGGTAGCATAGTCATCATTACTACTCGAGACAAGCACTTATTAACAAGTCATGGGATACAAAGAACATATGTAGTAAAAGAGTTAAATGGGAAAGAAGGTCTTGAATTGTTGAGGTGGATGGCTTTCAAAAATAACAAAGTTCATTCAAGTTATGAGGATGTTTTAAACCGGGCTGTTGCTTATGCTTCTGGCTTTCCATTAGTTTTAGAAATAGTGGGTTCCAATTTGTTTGGAAAGCGCGTAGAAGAATGGAAGTATACATTAGATGGGTATGAAAAGATTCCCAATAAAGAGATCCAAAAGATACTTAAAATAAGCTTTGATGCTTTGGAGGAAGAGGAACAAAGTGTCTTCCTAGATATTGCTTGTTGCTTTAAAGGATGTAGTTTGACAGAGGTTGAAGAGATACTCCATGCTCAGTATGGTGGCTCCATGACACATCGAATTCAAGTATTGGCAGAAAAATCTCTCATTAAGATTGGTCATTTCGAGCAGAGTTGTATTTGTAATGTGACATTACATGACTTGATAGCGGAAATGGGTAAAGAAATTGTCCGACAAGAATCACCCAAAAAACCTGAAAAACGCAGTAGGTTGTGGTTCCGAGAAGATATAATTCAAGTGTTAGAAAAGAATGCGGAAAATAGTGATATTGAAATCATATCTCTGGATTGCGGCTCATCTGAAGCAGCAATAGATTGGAACGGAATGGCTTTCGGGAAGATGAAAAGGCTCACGACACTTATTATTAAAAGTGATAATTTTTCCAAAGGCTCTATAGATTTTCCAAGTAATTTGAGAGTATTAAAATGGCAAAAATATCACTTGCAGTGTATTCCGTACTGTTTTTTCAACAAGATGTTTGTGAATATAAAGGTTTTGAAATTTGACAATTGTGAATATTTAACACAAATATCAGATGTCTCTTGTCTTCCAAATTTAGAGAGTTTTTCATTTGAAAATTGTGAGAATTTAATTACAATTCACAGTTCGATAGGATTGCTGAATAAACTTGAGTTCTTGAATGTCAGTGGTTGCATTAAGCTCAAAAGTTTTCCACCATTGATGTTGGCTTCTCTTAAAAAACTGAAACTTTCACATTGTAAGAGTCTACAAAGTTTTCCAGAAATATTAGGCAAGATTGAAAATATAGAAGATATTGATATTCGGGAAACTTCCATAGAGGACTTTCCCGTTTCATTTCAAAATCTCACCGGACTTATTTCGATATCTATAAAGGGACATGGGGTGTTTAGGTTACCAAGTTTCATTTCAAAGATGCCAAAATTCTCAAGTATTTGGGTTCACCAATATCATTTCATAATGCCAAGACAGTTTTCCACAATGTCTTCAAATGTGAAATGGCTTTATCTCTATGAAAGCAACCTCTCAGTCTCAGATGAATACCTTCCAATAGTTCTCACTTGGTTTTCTAATGTGGAAGAATTAAACCGAGTTGGAGTCAATTTCAAAATTCTTCCGGAATGCCTCAAAGAACATTGTCCTCTACATGAACTTGGATTGTTTAGTTGCAAGTCTCTTGATGAAATAAAAGGGATTGGGCTAAATCTTGTTATTCTGTCTGCATTAGACTGCAAATCACTGAATTCCTCTAGTAGAAGAAGTATGCTAGGGAATCAGGAACTACATGAGGGTAGAACTACCCATTTTTGTTTTCCACTAGGAAGTGAGAGGATTCCGGAGTGGTTTGAGCACCGAAGCATTGGACCAACGAGAATTTCTTTCTGGTTTCGTAACAAGATCCCTTCCATAGCTCTCTTCTTTTCTACTAAATGGATGTATGACCACAATGAAAAGCTTCAGTTAAGAGTAAATTTGTTCGTCAATGGCGGCTATAAATATACTTTTTCTCTTAAGGAATTTACTGAGGTTTCCTTGTTAGAAACGAATCATATATATCTAATATATATTGATTTGGAAGAACTAGTTCACCGCTCGGAAAACTATGAAAAACTTGAATCTAAACTAAAAGAAGCACTTTTAAAAAATGAATGGATCCATATGGAGCTTAAGTTAGAGAGCTATTCGAAGTTAGCAGATGATAACGATGAGATGAGGAAATCGCTCCATACAAAATTTGGAATCCACGTGTTCAAAGAGGAAAACAACTTAGAAGATATCGAATTCACCAATCCTTATAGAACGAGAAAATCATATTAA 2913 0.3653 MPLHPFVWMNLFTSFTASRQKKRLILPVFYGVEPSHVRHQNGSYGEALAKHEARFQGNKDNMERLKKWKLALNQAANLSGYHYTPGYEYKFIKGIVKYISNKINRVSLHVAEYPVGLHSQVLQVKSLFDNRYDDGVLMVGIYGAGGLGKSTLARAIYNFVADQFEDICFIHNVRENSSQNNLKHLQEELLLKTVGLDITLGDVSEGIPIIKERLHRKKILLVLDDVDKLKQLQVLAGGLDWFGAGSIVIITTRDKHLLTSHGIQRTYVVKELNGKEGLELLRWMAFKNNKVHSSYEDVLNRAVAYASGFPLVLEIVGSNLFGKRVEEWKYTLDGYEKIPNKEIQKILKISFDALEEEEQSVFLDIACCFKGCSLTEVEEILHAQYGGSMTHRIQVLAEKSLIKIGHFEQSCICNVTLHDLIAEMGKEIVRQESPKKPEKRSRLWFREDIIQVLEKNAENSDIEIISLDCGSSEAAIDWNGMAFGKMKRLTTLIIKSDNFSKGSIDFPSNLRVLKWQKYHLQCIPYCFFNKMFVNIKVLKFDNCEYLTQISDVSCLPNLESFSFENCENLITIHSSIGLLNKLEFLNVSGCIKLKSFPPLMLASLKKLKLSHCKSLQSFPEILGKIENIEDIDIRETSIEDFPVSFQNLTGLISISIKGHGVFRLPSFISKMPKFSSIWVHQYHFIMPRQFSTMSSNVKWLYLYESNLSVSDEYLPIVLTWFSNVEELNRVGVNFKILPECLKEHCPLHELGLFSCKSLDEIKGIGLNLVILSALDCKSLNSSSRRSMLGNQELHEGRTTHFCFPLGSERIPEWFEHRSIGPTRISFWFRNKIPSIALFFSTKWMYDHNEKLQLRVNLFVNGGYKYTFSLKEFTEVSLLETNHIYLIYIDLEELVHRSENYEKLESKLKEALLKNEWIHMELKLESYSKLADDNDEMRKSLHTKFGIHVFKEENNLEDIEFTNPYRTRKSY 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07586 970 Pfam NB-ARC domain 124 350 IPR002182 GO:0043531
Vifa1g07586 970 Gene3D - 271 355 IPR042197 -
Vifa1g07586 970 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 644 IPR044974 GO:0006952
Vifa1g07586 970 Pfam TIR domain 20 104 IPR000157 GO:0007165
Vifa1g07586 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 365 IPR027417 -
Vifa1g07586 970 SMART AAA_5 135 272 IPR003593 GO:0016887
Vifa1g07586 970 Gene3D - 8 102 IPR035897 -
Vifa1g07586 970 Gene3D Ribonuclease Inhibitor 627 793 IPR032675 -
Vifa1g07586 970 SUPERFAMILY L domain-like 475 781 - -
Vifa1g07586 970 Gene3D - 103 267 IPR027417 -
Vifa1g07586 970 Gene3D Ribonuclease Inhibitor 466 626 IPR032675 -
Vifa1g07586 970 SUPERFAMILY "Winged helix" DNA-binding domain 341 454 IPR036390 -
Vifa1g07586 970 PRINTS Disease resistance protein signature 213 227 - -
Vifa1g07586 970 PRINTS Disease resistance protein signature 138 153 - -
Vifa1g07586 970 PRINTS Disease resistance protein signature 306 320 - -
Vifa1g07586 970 PRINTS Disease resistance protein signature 599 615 - -
Vifa1g07586 970 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 81 IPR035897 -
Vifa1g07586 970 Coils Coil 890 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07586 Vifa-Chr1 1177082387 1177085824 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07586 115 645 WRKY Transcription Factor Family AT5G45050 30.769 1.61e-61 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07586 - - cam:101500791 1028.85