Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07585 ATGATGTTGGATGAGGTTGGAGGCACCTTGCTTACAGTTCTCAAAGTTTACTTGGGAGGCCTTAGAAAAAAGGCTCAACCTGGAAATATTTGGCTGAATCTCTTGTGGAAACAATTAAAACTATTGCAACAAATGAATGAAATATGGATGGATCATCGCAATGCTCGGCCTGAAATCAACCTTTCCTTTTCCAACATTTATATCTATCCTGATCCTGACAATAATACAATGCAATCAAATTCCTGTTCCTCCTTCTCTCACGAGTTCAAGTATGACGTGTTCATCAGTTTCAGGGGCTCCGGCTTCACCGGTAATCTCTATAAAGCTCTTTCTGACAATGGAATTCGAACCTTTATTGATGACAAGGAGCTTCAGAGAGGTGACAAAATCACACCTTCGCTCCTCAAGAACATTGAAGACTCGAGGATTGCCATTATTGTCTTCTCTTCAAACTACGCTGCTTCTTCATTTTGCTTGGACGAACTTGTCCACATCATTAACTACTTTAAGGAAAAGAGTCGCCTTGTTCTGCCAGTTTTCTATGACACGGAACCTTCTCAAGTACGACAGCAGAACAACAGGTATGGTGAAGCACTTGCTGATTATGAGAAAAGGTTCCAAAATAACAAGGAAAAGATGGAGCGGTTGCAAAAATGGAAGATGGCTCTTACCTACGCAGCTGACTTGTCTGGCTACCATTACAATTTCAGGAAAGAAGAATATGAATACATATTTATCAATAAGATAGTTACAGAGATTTCCAGCATGATCAATCGTGTTCTTTTACATGTTGCCGATCACCCCGTTGGGCTCAAATCTCAACTACAGCAAGTAAAGTCGCTTCTGGATTTTGACTCTGATAAGGGAGTCTGTCTGATTGGGATATATGGAAGTGGAGGATTGGGTAAAACAACACTTACTCGAGCAGTTTATAATATGGTTGCTGATCAATTTGAAGCAGTTGGGGACCTTGGGTGGCTCGGTCTTGGGAGCAGAGTCATCATTACCACTCGAGAGAAATATTTGTTATCATGTCACGGGATTAAAAGAACATATGAAGTAGATGGCTTAAATGAGAAAGAAGCTCTTGAGTTGTTTAGCTGGATGGCTTTTAAATGTGACAAAACTGATTCAAGTTACGATAATATTTTAAACCATGCACTTATACAACAAAGTGTCTTTTTGGATATTGCATGTTGCTTCAAAGGGTGTGAATATACACAAGTTCAAGAGATACTTCATGCACATTATGGTCATTGCATAAAAAGCCACGCTCGGGTGTTGGTTGATAAGTCTCTCATAAAGATAAATGTTTATGGTTATGTGACATTACATGACTTGATAGAGAATATGGGTAAAGAAATTGTCCGACAAGAATCACCCAAAGAGCCTGAAAAACGCAGTAGGTTGTGGTTTCATGACGATATAGTTCATGTTTTAAAAGAAAATACGGGAACTAGGAAAATTGAAATGATACATTTGAATTTTCCCTCAACCGAAAGAATAATAGATTGGAATGGAGAGGCATTCGAAAAGATGATAAAGCTCAAAACACTCATCATTGAAAATGGTCATTTTTCTAAAGGTGCAAGATATCTTCCAAGTAGTTTGAGAGTATTGAAATGGAATAGCCATCATTTGGAGTCTCTATCATCTATGCTATTGAACAAGATGTTCGAGTATATGAAAGTTTTGACATTTAATGATTGTCAGTATCTAACCGATATACCTAATATCTCAAGAGAATTGCCATTTTCATTTCAAAGTCTCAGTGAACTTGTATCTTCAAAAGTGGAATATCGTAATCTCGGAAAGAATAACCTCTCAGAGGAATGCCTTCCAATAGTTCTCACACGGTTTGCTAGTGTGAAATATCTATACTTATGGAATAACAATTTCAAAATTCTTCCCAAGTGCCTTGATGAATGCCACCTTATTAGAATCCTTGAATTGGATGGCTGCAAGTCTCTTGAGGAAATTAGAGGGATCCCACCGAATCTAGAAAAGTTTTCTGCCATCCGATGTGAATCATTAACTTTCTCGTGTAGAAGAATGTTATTGAGTCAGAAACTACCTGGGGCTGGATGCACTGAGATTTGTTTGCCAACCGAAACAGAGGACATTCCAGATTGGTTTGAGCACAAAATTGAGGGACATACAATTTTTCATGTAGCAAGACGTCTCCCTCCGTTGGGAAAGTTTCTAAGGCAGAAGATGTGCAGCATCACCAACAGCATAAGTGTGTTTTACTATCAAGACCTTGCCCTCGGTTGA 2274 0.387 MMLDEVGGTLLTVLKVYLGGLRKKAQPGNIWLNLLWKQLKLLQQMNEIWMDHRNARPEINLSFSNIYIYPDPDNNTMQSNSCSSFSHEFKYDVFISFRGSGFTGNLYKALSDNGIRTFIDDKELQRGDKITPSLLKNIEDSRIAIIVFSSNYAASSFCLDELVHIINYFKEKSRLVLPVFYDTEPSQVRQQNNRYGEALADYEKRFQNNKEKMERLQKWKMALTYAADLSGYHYNFRKEEYEYIFINKIVTEISSMINRVLLHVADHPVGLKSQLQQVKSLLDFDSDKGVCLIGIYGSGGLGKTTLTRAVYNMVADQFEAVGDLGWLGLGSRVIITTREKYLLSCHGIKRTYEVDGLNEKEALELFSWMAFKCDKTDSSYDNILNHALIQQSVFLDIACCFKGCEYTQVQEILHAHYGHCIKSHARVLVDKSLIKINVYGYVTLHDLIENMGKEIVRQESPKEPEKRSRLWFHDDIVHVLKENTGTRKIEMIHLNFPSTERIIDWNGEAFEKMIKLKTLIIENGHFSKGARYLPSSLRVLKWNSHHLESLSSMLLNKMFEYMKVLTFNDCQYLTDIPNISRELPFSFQSLSELVSSKVEYRNLGKNNLSEECLPIVLTRFASVKYLYLWNNNFKILPKCLDECHLIRILELDGCKSLEEIRGIPPNLEKFSAIRCESLTFSCRRMLLSQKLPGAGCTEICLPTETEDIPDWFEHKIEGHTIFHVARRLPPLGKFLRQKMCSITNSISVFYYQDLALG 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07585 757 SUPERFAMILY L domain-like 497 675 - -
Vifa1g07585 757 FunFam Disease resistance protein (TIR-NBS-LRR class) 87 259 - -
Vifa1g07585 757 Gene3D Ribonuclease Inhibitor 450 700 IPR032675 -
Vifa1g07585 757 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 316 377 IPR044974 GO:0006952
Vifa1g07585 757 Pfam TIR domain 90 256 IPR000157 GO:0007165
Vifa1g07585 757 Gene3D - 88 257 IPR035897 -
Vifa1g07585 757 PRINTS Disease resistance protein signature 641 657 - -
Vifa1g07585 757 PRINTS Disease resistance protein signature 292 307 - -
Vifa1g07585 757 Gene3D - 258 322 IPR027417 -
Vifa1g07585 757 ProSiteProfiles TIR domain profile. 89 257 IPR000157 GO:0007165
Vifa1g07585 757 SUPERFAMILY Toll/Interleukin receptor TIR domain 83 232 IPR035897 -
Vifa1g07585 757 SMART till_3 90 229 IPR000157 GO:0007165
Vifa1g07585 757 SUPERFAMILY "Winged helix" DNA-binding domain 390 481 IPR036390 -
Vifa1g07585 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 383 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07585 Vifa-Chr1 1177062010 1177082285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07585 321 550 WRKY Transcription Factor Family AT4G12020 30.928 9.01e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07585 - - lja:Lj0g3v0362909.4 400.208