Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07577 ATGTTAGGGATATATGGAATTGGAGGATTGGGAAAAACAACACTTGCTCGGGCAATTTACAACTCCATGGCTGATCAATTTGAAGTGTTATGTTTTCTTCATAACGTGAGAGGAAATTCAGCTAAATATAACTTGGAACGTCTCCGGGAGATGATCCTTTCCAAAATAAAGGGACCAGAAATTCGGCTAGGAGATGTAAGCGAGGGGATTCCAATCTTAAAGCAAAGGCTACATTGCAAGAAGGTTTTGTTGGTTCTCGATGATGTTGATGATCTGAAGCAGTTGCAGGTTTTAGCTGGAGGACTTGATTGGTTTGGTCTTGGGAGTGTAGTAATTATTACCACTCGAGACAAACATTTGCTAGCAAATCATGGGATTGAAAGAACATATGAAGTAGATAAGTTAAATCAGGAAGAAGCTCTGGAATTGTTGAAGTGGAACTCATTTAAAAATAAAACAATTGATTCAAGTTTTGAAGGCATTTTAAAACGTGCAACAACTTATGCTTCTGGATTATTCATTTTAATTTTATTTATGCAGAAGTTAACGAATCTCAAAAGTTTTGAACTTTAA 573 0.3613 MLGIYGIGGLGKTTLARAIYNSMADQFEVLCFLHNVRGNSAKYNLERLREMILSKIKGPEIRLGDVSEGIPILKQRLHCKKVLLVLDDVDDLKQLQVLAGGLDWFGLGSVVIITTRDKHLLANHGIERTYEVDKLNQEEALELLKWNSFKNKTIDSSFEGILKRATTYASGLFILILFMQKLTNLKSFEL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07577 190 Gene3D - 1 130 IPR027417 -
Vifa1g07577 190 Pfam NB-ARC domain 2 179 IPR002182 GO:0043531
Vifa1g07577 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 186 IPR027417 -
Vifa1g07577 190 PRINTS Disease resistance protein signature 1 16 - -
Vifa1g07577 190 PRINTS Disease resistance protein signature 76 90 - -
Vifa1g07577 190 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 173 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07577 Vifa-Chr1 1176495388 1176495960 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07577 2 171 WRKY Transcription Factor Family AT5G45050 33.333 4.15e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07577 - - tpra:123910163 211.46