Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07573 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAACAAAGCTTGAATCTATGGACTATAATGTTTCTATCTTCTACAATGTGAACGAAGCTTTGTCGGGGATCTCGAGTAGTCCCAAAGGCTTCCATGTTGCCGTAGTCGAGGTGAGTACAAGCTGTCCTGATGGAGGTTTCAAGTTTCTCGAGAATGCTAAGGACTTGCCAACCATTATGACTTCGAACATTCATTGCTTGAATACAATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCTAACTAAACCGCTCTCTGAGGATAAGCTGAAAAATATTTGGCAGCATGTGGTTCACAAGGCCTTCAATGCGGATAAAAGTGCTATGTCTGAACCGCAAAAACCTGTCAAAGAATCCGTTGAGTCCATGTCGATAGATTTAGATAAGGTGTCTAAGTTTAGTGATAACGAACAAGAGCATTCTGCAGCGAGTGATAAATATCCGGCTCCTTCAACACCGCAGTTAAAACAAGTTGCGAGGTTAGTGGATGATGGTGATTGCCATGAGCAGACTAAGTGCTCAATAGAAAAAGAAAGTGGAGAACATGATGGTAGTGAATGTAAATTTGTCGAAACTTCATGTGAGAATTTGAATACCGAAAATTCTCTTCAACCAACAAAACCTCTGATTAAGGAGGAAGAGGATAGTTCAAAAGGTGAGAGCGGTGTCTCAACAAATCCACAGAGTAAAAATCTTCTCGACAACGCTGATGGTAATGCGTCTCCAAATGAAAGAAGTGGTCCTAAGGATTCATGTGAGAATAGAGCTAATCGGAAGAAGATGAAAGTAGACTGGACATCCGACCTGCACAAAAAATTTGTGAAGGCAGTTGAACAACTAGGCATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGACGGTTTGACAAGGCATAACGTTGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGATGTTGCACGCAGACGAAGATCGAAAATGGCCAAATCAAAGAGATCCAATGCAAAGGAACTATTGTATGCAAAGACCAATCATGGCCTATCCGCCATATCATTCTAATCACACCTATCCTCCAGCTCCTATATATCCTATGTGGGGACAACCAGGAAGTCAAATAGCTGGTGTACCGATTTGGGCTCCTCCTCCTCCTGGTTATCCTCTATGGCAACAACCTACAGAAAATTGGCATTGGAAGCCTTATCCGCCCGGGGTGCATGTGGATGCATGGGGTAACCCAATGTTACCACCTCAAACTCCTTGTTTTCCCTACACTCAAAATATAATCGGATTGCAAAATGCAAAAGCAACAGATTATAGATTTGGCATGCCACATAATTCCTTCGAGCATTATCCGGCAGAGGAAGTGGTGGACAAGGTTGTGAAAGAGGCAATAAACAAGCCATGGCTACCATTACCAATAGGACTCAAACCTCCATCAATGGATAGTGTTATGGCTGAACTCACCAAAGAAGGTATCCCTTTTAGCAAGGGAAAGGGCTCTAAATCTAAACCATGCTGA 1620 0.4235 MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRTKLESMDYNVSIFYNVNEALSGISSSPKGFHVAVVEVSTSCPDGGFKFLENAKDLPTIMTSNIHCLNTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNADKSAMSEPQKPVKESVESMSIDLDKVSKFSDNEQEHSAASDKYPAPSTPQLKQVARLVDDGDCHEQTKCSIEKESGEHDGSECKFVETSCENLNTENSLQPTKPLIKEEEDSSKGESGVSTNPQSKNLLDNADGNASPNERSGPKDSCENRANRKKMKVDWTSDLHKKFVKAVEQLGIDQAIPSRILELMKVDGLTRHNVASHLQKYRMHKRQMLHADEDRKWPNQRDPMQRNYCMQRPIMAYPPYHSNHTYPPAPIYPMWGQPGSQIAGVPIWAPPPPGYPLWQQPTENWHWKPYPPGVHVDAWGNPMLPPQTPCFPYTQNIIGLQNAKATDYRFGMPHNSFEHYPAEEVVDKVVKEAINKPWLPLPIGLKPPSMDSVMAELTKEGIPFSKGKGSKSKPC 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07573 539 SUPERFAMILY Homeodomain-like 293 351 IPR009057 -
Vifa1g07573 539 SUPERFAMILY CheY-like 16 136 IPR011006 -
Vifa1g07573 539 Gene3D - 18 148 - -
Vifa1g07573 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 291 350 IPR017930 -
Vifa1g07573 539 MobiDBLite consensus disorder prediction 254 281 - -
Vifa1g07573 539 Pfam Myb-like DNA-binding domain 297 346 IPR001005 -
Vifa1g07573 539 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 527 IPR044825 GO:0003700|GO:0045893
Vifa1g07573 539 FunFam Two-component response regulator-like APRR2 17 143 - -
Vifa1g07573 539 FunFam Two-component response regulator 290 353 - -
Vifa1g07573 539 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Vifa1g07573 539 Gene3D - 290 352 - -
Vifa1g07573 539 MobiDBLite consensus disorder prediction 167 186 - -
Vifa1g07573 539 NCBIfam myb-like DNA-binding domain, SHAQKYF class 294 349 IPR006447 GO:0003677
Vifa1g07573 539 MobiDBLite consensus disorder prediction 233 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07573 Vifa-Chr1 1175893038 1175896798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07573 1 526 Response Regulator Gene Family AT4G18020 48.829 2.51e-135 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa1g07573 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07573 - - gmx:100784905 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07573 1 1175893038 1175896798 Vifa4g02802 4 888856331 888859585 PCT