Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07568 ATGCAATCCCAAAAGTGTTGGGACCTGAGCGTTGGGGGTTTGAGAATTGGGACATCCCCTTCTAGAAAGTTTGGACGAGACTCTTGTTTGGGAACTAAACCAAGTTGGAAACTAAGGCTTGAACTTGCAATAGGAATAGCAAGGGGACTTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGGGTTCAAGAGGATCCAGTTCTTAGACCAATCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 705 0.3915 MQSQKCWDLSVGGLRIGTSPSRKFGRDSCLGTKPSWKLRLELAIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWWVQEDPVLRPIMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07568 234 SUPERFAMILY Protein kinase-like (PK-like) 32 225 IPR011009 -
Vifa1g07568 234 Gene3D Transferase(Phosphotransferase) domain 1 27 220 - -
Vifa1g07568 234 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07568 234 Pfam Protein kinase domain 42 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07568 234 SMART serkin_6 4 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07568 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 61 73 IPR008271 GO:0004672|GO:0006468
Vifa1g07568 234 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 220 - -
Vifa1g07568 234 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 32 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07568 Vifa-Chr1 1175229738 1175230617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07568 42 232 Receptor kinase-like Gene Family AT5G38260 42.857 8.28e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g07568 Pkinase 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07568 - - mtr:11434023 362.844