Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07567 ATGGACGATTACACGAGAGAGATGATGGACCTCAAAACCCTCGTGACTCGCACTCTTGAGAAGAAAGGTGTTCTCGCTAGGATCCGAGCTGAATTAAGAGCTAGTGTCTTTGAAGCTATCGAAGAAGAAGATCGTGTCATCGAAAAGGATCAAGCTCTGCCTCCTGCATTGTTAGGTAGCTGTAACGATCGTGCTAAACAGCTTCACGCTTCTCCTTCTGGTAGACTTCTTACTGCACTGGTATGTGAATACCTTGACTGGGCACAGCTTACTCACTCGCTAAAAGTTTATCTTCCAGAATATAATTTGGAGAAAGATTTTTGGAAGTCTGAGTTGAAAGAGTTTAGTAGCAAAAATGGATATGATCTTAATAGAAATGGAGACAGTCCCGTGCTCTTGGATGTGCTTGAAGGATTCTTGAAATTTGAGGTTGTGAATTGGTCTCCTATTACAACCGGGGTTATGTCAAAATGTTGTAGGGTCTTTAGGTTAGATGAAGCAGAAAAACTTGTAGACAAACACAAGCATCACAAGCCTATGATTGCAGACGAGACTTATAAGAACTTGCATTCATGTTTGAATCGTAAGGCAGCATCTCGTGAAGGGTCAAATGACAACAATATATATTGCCCGGAGGCTAAAATTGCATATCCTGAGGATTTACTACAATTTCAATGGCACTGGAGAAAAGGGGAGCTAGTAATTGTCAGGAACCTGCTTGGAGGTGGTACATTTAGTTCATTATTATGGGAACCATCACACATGAGCCATGCAATCAGTCAGAAGCATGAGACTGTGAAGGCCATTAATTGCTTAAGTTTGTGCGAGGAAGAAGTTACAATCAACCAGTTCTTTACTGAGTGCGCTAATGATTGCATGCATTCAAGTAAACAGCCTCACATGTTGAAGTTGAAAGATTGGCCTCCTTCTGAATCATTTAAGGAATGTTTACCTATTCATTTTAAGAACTTCGTATCTTACTTGCCGTATAAAGAATACACACATCCTGTAAGTGGTTCTCTTAACCTTGCCGTGAAGTTGCCTGATGGTTGTCTGAAGCCAGACATGGGGCCAAAAGCATACATTGCTTATGGAGTTGCTAAGGAGCTTGGGCGCGGTGATTCTGTGACAAAGCTCCATTGTGACATGTCTGATGCAGTAAACGTGTTGACTCATGTTGCTAAAGTGAAATTGGGTTCTGAGAATGTTACTGCCATTGAGAAATTGATGCCAAAGAACCTTGAGCAAGACAAGAGGGAATTACATGATATTCATCAGGATGGGGAGGCTAATGATGATGGCACATCTGGGTCTAAGCTCAAAGAAGTTGAAAAAGGTACAGTGGAGCAAGGAGATAGTTTGTTGGATGCAGTGGATTCTTTGGATGGTGCTCTCTGGGATATTTTTCGAAGAAAGGATGTACCTATATTGGAGGGATATTTATACAAGCATTTCGGAGAGTTTAGTCATTTTGACTGCCATCCTTTAACGAAGGTTACTCACCCCATCCATGATCAGACATTTTATCTGACTATGGAGCATAAGAAGAAGCTTAAGCAGGAGTGTGGAATTGAGCCCTGGACCTTCACTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTTATCAAGTCAGAAATCTGAACTCATGCACCAAGGTTGCACTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGCATCCATTTGACAGAAGAATTCCGCAAACTTCCGAAAAATCACGGGTCCAACGAGGACAAATTGCAGGTGAAGAAAATGATTATACATGCTGTGGACGATGCAGTCAAAAAGTTGAAAAACTCGACATGTGCTAGCGGTTGGACAACTAACTTCAATTAA 1866 0.4164 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQALPPALLGSCNDRAKQLHASPSGRLLTALVCEYLDWAQLTHSLKVYLPEYNLEKDFWKSELKEFSSKNGYDLNRNGDSPVLLDVLEGFLKFEVVNWSPITTGVMSKCCRVFRLDEAEKLVDKHKHHKPMIADETYKNLHSCLNRKAASREGSNDNNIYCPEAKIAYPEDLLQFQWHWRKGELVIVRNLLGGGTFSSLLWEPSHMSHAISQKHETVKAINCLSLCEEEVTINQFFTECANDCMHSSKQPHMLKLKDWPPSESFKECLPIHFKNFVSYLPYKEYTHPVSGSLNLAVKLPDGCLKPDMGPKAYIAYGVAKELGRGDSVTKLHCDMSDAVNVLTHVAKVKLGSENVTAIEKLMPKNLEQDKRELHDIHQDGEANDDGTSGSKLKEVEKGTVEQGDSLLDAVDSLDGALWDIFRRKDVPILEGYLYKHFGEFSHFDCHPLTKVTHPIHDQTFYLTMEHKKKLKQECGIEPWTFTQKLGDAVFIPAGCPYQVRNLNSCTKVALDFVSPENVGECIHLTEEFRKLPKNHGSNEDKLQVKKMIIHAVDDAVKKLKNSTCASGWTTNFN 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07567 621 Pfam JmjC domain, hydroxylase 465 560 IPR003347 -
Vifa1g07567 621 Gene3D - 59 138 - -
Vifa1g07567 621 Gene3D Cupin 206 586 - -
Vifa1g07567 621 ProSiteProfiles JmjC domain profile. 336 577 IPR003347 -
Vifa1g07567 621 ProSiteProfiles LIS1 homology (LisH) motif profile. 73 105 IPR006594 GO:0005515
Vifa1g07567 621 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 184 612 IPR045109 GO:0032454|GO:0033169
Vifa1g07567 621 SMART cupin_9 317 577 IPR003347 -
Vifa1g07567 621 Pfam LisH 77 103 IPR006594 GO:0005515
Vifa1g07567 621 SUPERFAMILY Clavaminate synthase-like 211 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07567 Vifa-Chr1 1175225400 1175229677 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa1g07567 JmjC 1.2e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07567 K15601 - vvi:100261347 479.559