Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07552 ATGCTAGCTAACAGCTTATCTCCTTCTTCACTTCCATCTTCGGAGCCTTTTTCTTGCAATGAAAATGGTACTTCTTCCAATAATAAAAGAAAAAGAAGACCCGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCGAAAACATTATTGGAATCAGATCGATATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTGCAGATGCATAGAAGAAGGCATAAAGTACCATGGAAGTTACTCAAGAGAGAAACACCAGTTGTTAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGCCATGCTCTAGGTGATCTTGTGGGAATTAAGAAACACTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGTTCCAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCTTGTGATTGCGGTCGTGTATTCTCAAGGGTTGAGAGTTTTATTGAGCATCAAGATGCTTGTAACATGGGAAGGATCCATAATTCAGAATCTCAACCATTACAAACACCAACTGCATGTTTATCAAGAACTGCTTCAAGTCCAAGTCCATCAAGTGAAACAAATTTCAACAATTGTCCATGGCAAACAAGGCTTCAAGTAATGCAAAATTCGATAAAAGAAAAACCGATATTCATGAACCCTATTATTACTCCAATTACTACTATTACGCCTTCTTCTCAAATAACTTTGTCCAAGAACAATAAACTTGTTCTCCATCCAAACTTGGAACTTCAACTCTCCACCACAAACAACGCCAACAACGCCAGTATGAGTCTGGCACCAGACACGCCTTCGATCAGAAGTATCAGTGCTACAGAGGCTATTCAAAAGGCTAACAGGTCAACTCAGTTGCATCTTGCAATAGGGTCATCAGAGATGAGTCATCATGAGAGAAATGAAACAAACTATTTTAGAAACAACTCATACTCATCGCCGAAAGAGAGTAGCAATAGCAATGAAAAGGTTCAATCAACAAACAACATGGCTTTGTTTAAGGTTCAAGAACAAACAAAGGAACAGCTAAGGATAGCCATGGCTGAAAAATCCTATGCTGAAGATGCAAGGAAACAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAATTCAACAATGCAAAGAGAATCAGACAACAAGCACAAAGTGAACTTGACAAAGCTTACGGATTGAAACAACATGCAATAAGGAAAATCAATTCAACTATGCTTCAAATCACTTGTCAAGCTTGCAAACAACAGTTTCAACATGAAGATAACTCTTTGGTGTTCAGCTATGTTTCTTCTGCCATAACAACTGAAGGTGGTGAAGTAGAAAATGATGATGGAAAAGGCAAAAAAACTAACTAG 1431 0.3816 MLANSLSPSSLPSSEPFSCNENGTSSNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSESQPLQTPTACLSRTASSPSPSSETNFNNCPWQTRLQVMQNSIKEKPIFMNPIITPITTITPSSQITLSKNNKLVLHPNLELQLSTTNNANNASMSLAPDTPSIRSISATEAIQKANRSTQLHLAIGSSEMSHHERNETNYFRNNSYSSPKESSNSNEKVQSTNNMALFKVQEQTKEQLRIAMAEKSYAEDARKQAKKQIEMAEQEFNNAKRIRQQAQSELDKAYGLKQHAIRKINSTMLQITCQACKQQFQHEDNSLVFSYVSSAITTEGGEVENDDGKGKKTN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07552 476 Gene3D Classic Zinc Finger 36 98 - -
Vifa1g07552 476 SMART c2h2final6 135 162 IPR013087 -
Vifa1g07552 476 SMART c2h2final6 58 80 IPR013087 -
Vifa1g07552 476 SMART c2h2final6 99 129 IPR013087 -
Vifa1g07552 476 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 384 IPR031140 -
Vifa1g07552 476 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g07552 476 MobiDBLite consensus disorder prediction 332 351 - -
Vifa1g07552 476 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Vifa1g07552 476 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g07552 476 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Vifa1g07552 476 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vifa1g07552 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vifa1g07552 476 FunFam protein indeterminate-domain 12-like 37 105 - -
Vifa1g07552 476 Coils Coil 377 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07552 Vifa-Chr1 1171970230 1171973357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07552 21 467 C2H2 Transcription Factor Family AT2G01940 52.790 6.67e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g07552 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07552 K25871 - gmx:100785333 643.269