Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07550 ATGGATTCGCGTGAACCACCACAACCTCCTCATCACCCTCACCCTCACCCTCACGCTCACCACTTTCAGCCACCGTTGAACGCTGTCTTGGTGGGACCCAATCCGTTCACCAACACTGCTCCGACTACCATGATGGCGCCTGCTACTGCTCGATTCCCTCTCTTCAACATGAACGCTAACCCTGCTAACCCTCCTCCTCATTCCGAGCCTTTTACCACCATTACCACCACCGCCACTGTCAACATCACCGCCAACACTGTTGCTCCTCCCACCTTGGTGCCATGTGTTGCTGGTTCCTCTGAGTCTTTCAAGAGAAAGAGGGGTCGGCCGAGGAAGTATTTTCCTGATGACAGCACTGCTCTGGGATTGGGCTCGGGTTCGGGCTCTGGTTCGGGTTCAGGGCAGGCTCTTGCTATGAACTCTCCTGATTCTTCAACTGCCAAGAAGAGTAAGAAGGGGAGAGGAAGGCCCCGTGGCTCTGTTAAAAAGAAGCTTGGAGATAATGGCTCTGCTTTCCGTCCTCATGTGATCATGGTGAATCATGGAGAGGACATTTCTGAAAAAGTTATGGCCTTTAGTCAAGAAAAAGCGGGACCTGATACAGAGGTGTGCATTGTTTCTGCTGAAGGTTTGATTGGCACTGTTGCCTTTCATCAGGCGGGGAGCATTGTGGTTTTTGAGGGCCAATTTGAAATTATATCCCTGTCAGGCCAGTCAGTAGAATCTGACGATGGCAGTGGCCTTAAAAGAATGAGTAACTTGAAGGTTTCTGTAGGGGGTCCTGATTCACGCCTTTTGGGAGGTGTAGTTGCTGATAAGCTTGTTGCGGCATCGACCGTAAAGGTCATAATGGCCTGTTTTACTTTGGATGGCAAAAAGACTAGCTCAAACAACCAGAAATCTGGGCCGTCTTCAACCCCACCATCCCATTTTGCTGCTTCTGGGACTCCAACTAGCCCTACATCTCGAGGGCCTTCATCCGAGTCCTCTGGCGACCATGAGAATAGTCCTTTTACTCAGGGACCTGGAATTTACAACAATGCAACTCAGGTAGATCAAAACATGATGTTCCACCACCAGCAAATCTGGGCTCGCCAAACTCAGCAGTGA 1110 0.5045 MDSREPPQPPHHPHPHPHAHHFQPPLNAVLVGPNPFTNTAPTTMMAPATARFPLFNMNANPANPPPHSEPFTTITTTATVNITANTVAPPTLVPCVAGSSESFKRKRGRPRKYFPDDSTALGLGSGSGSGSGSGQALAMNSPDSSTAKKSKKGRGRPRGSVKKKLGDNGSAFRPHVIMVNHGEDISEKVMAFSQEKAGPDTEVCIVSAEGLIGTVAFHQAGSIVVFEGQFEIISLSGQSVESDDGSGLKRMSNLKVSVGGPDSRLLGGVVADKLVAASTVKVIMACFTLDGKKTSSNNQKSGPSSTPPSHFAASGTPTSPTSRGPSSESSGDHENSPFTQGPGIYNNATQVDQNMMFHHQQIWARQTQQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07550 369 CDD DUF296 173 283 IPR005175 -
Vifa1g07550 369 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g07550 369 Gene3D - 173 300 - -
Vifa1g07550 369 ProSiteProfiles PPC domain profile profile. 169 308 IPR005175 -
Vifa1g07550 369 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 288 - -
Vifa1g07550 369 MobiDBLite consensus disorder prediction 293 347 - -
Vifa1g07550 369 SMART AT_hook_2 104 116 IPR017956 GO:0003677
Vifa1g07550 369 SMART AT_hook_2 151 163 IPR017956 GO:0003677
Vifa1g07550 369 MobiDBLite consensus disorder prediction 100 169 - -
Vifa1g07550 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 343 IPR039605 GO:0003680
Vifa1g07550 369 MobiDBLite consensus disorder prediction 122 146 - -
Vifa1g07550 369 Pfam Plants and Prokaryotes Conserved (PCC) domain 173 287 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07550 Vifa-Chr1 1171372459 1171375508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07550 100 351 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 39.405 5.22e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07550 - - cam:101504328 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07550 1 1171372459 1171375508 Vifa4g02778 4 875273744 875284173 PCT