Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07548 ATGAGGAAATTGGCCGAGATGACGAAAGATGCAGGTGAGGAGAGTGAGGAATCAAAAGGTCTATGTGCTTTTCGGGTTGGATTTATTTCTGAAGCACATGGATGTCTAGCTGAAATCTATTCTGGTGGAAGAATGAAAGAATTGCATGCACAAGGAGTTTCACAAAGTCGTTATCATGAAAAGACTCAAGAACAGAAAAGGTTGGAGAGAAGAAGGCAGATGGCATATCATATGCATATAAATCTAGAGCTCTTGGAATCAGTGCATCTTACATCTACTATGTTGCTGGGAGTTCCAAACATGGCAGCCAATGTTCATGAAGTAAAGCGGAGGATCATCAGTAAGAATTTATGTCTCTTGCTTGGGGTCAGTGAGAAACAAACAGTTCACGATCCGTTCGAATAA 405 0.4099 MRKLAEMTKDAGEESEESKGLCAFRVGFISEAHGCLAEIYSGGRMKELHAQGVSQSRYHEKTQEQKRLERRRQMAYHMHINLELLESVHLTSTMLLGVPNMAANVHEVKRRIISKNLCLLLGVSEKQTVHDPFE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07548 134 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 20 132 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa1g07548 134 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 20 107 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07548 Vifa-Chr1 1171290918 1171291617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07548 20 134 Eukaryotic Initiation Factors Gene Family AT3G56150 68.696 5.22e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07548 K03252 - gmx:100781967 179.489