Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07546 ATGGTGGCTCCTCCTGATATTGCCCTTCTTTCCATGACTACTACTACTCACATCCATAAATCATCACAAACACAATCACAATCAAACCCTAACACCACCACACCATCATCATCAACTTGGATGTGGAACCCTAAACAACAACATCATCAACATGAACATGAAGATGAAGACTCATGGGAGGTAAGAGCTTTTGCAGAAGACACAAGGAACATCATGAACACAACATGGCCACCAAGATCCTACACCTGCTCTTTTTGTAGAAGAGAGTTCCGCTCAGCTCAAGCTCTTGGCGGTCATATGAACGTCCACCGCCGCGACCGTGCTCGTCTCCATCAAAATCAACCACCGTCAAATTCTTCCTCTCATCATCCTTCTTCTACGTTCATACATATCCCTCCTCAGGAGCTTGTTAGTGCTGGATTGTGCCTCTTTTACCATTCACCAAACCCTAATATCTCTTCCTTCAATCATTCTAATGGAGATTCTCCTTCAACTCTTCTCTCTATCTCATCATCTTATCTAACCAACAACTTGATGATGCAAACGCAAACGCAAACTTGTTCTCCTACACCTTTTCATTTTCAGGCTAATTCAACCAGAAACTTTATCAATAATAGCATCTCTTCTTTTTCTAACAAACCTGCTATCTGCACCTCCATTGATGATAAGGTTCATGAAATTGAAGAACTCGATCTTGAGCTACGATTGGGGAACAAGCCATCACCGGCATGA 732 0.4249 MVAPPDIALLSMTTTTHIHKSSQTQSQSNPNTTTPSSSTWMWNPKQQHHQHEHEDEDSWEVRAFAEDTRNIMNTTWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLHQNQPPSNSSSHHPSSTFIHIPPQELVSAGLCLFYHSPNPNISSFNHSNGDSPSTLLSISSSYLTNNLMMQTQTQTCSPTPFHFQANSTRNFINNSISSFSNKPAICTSIDDKVHEIEELDLELRLGNKPSPA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07546 243 MobiDBLite consensus disorder prediction 16 45 - -
Vifa1g07546 243 SMART c2h2final6 81 103 IPR013087 -
Vifa1g07546 243 MobiDBLite consensus disorder prediction 16 57 - -
Vifa1g07546 243 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Vifa1g07546 243 Gene3D Classic Zinc Finger 69 128 - -
Vifa1g07546 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Vifa1g07546 243 PANTHER OS07G0101800 PROTEIN 53 240 - -
Vifa1g07546 243 Pfam C2H2-type zinc finger 81 105 - -
Vifa1g07546 243 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07546 Vifa-Chr1 1171082901 1171083632 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07546 37 240 C2H2 Transcription Factor Family AT4G17810 38.756 1.46e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g07546 zf-C2H2_6 4.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07546 - - tpra:123908941 266.544