Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07545 ATGGATGGAGATAATGGCCTTAACATAACCAATTGGGGCTACTATGAACCTGTTGCGTCTTTTAAGAGCCATCTCGGGTTACAACTAATGCCATCGATGCCGGAAAAGCCTCTGCTCGGAGGACGCAATGCTGCGGTTTTGTCGGGTTCTAATGGTGCATTTCACCATAGGGACATTGGGTTGCCTCAAACTACATACCCTATGGATTATATGAGGGATGCATGGTTTAGTAGTCAGAGAGATAATAAGTATATGAACATGAATATGATACCTACTAACCCTCCGACGAGTTATAGTAGTATGCCCGAGACATCTTCGGCTCATCATATTCAAATGATTCGACCACCTGAGTTGGTTAAGGAAGAGAAGCCGATGGAGGAGGTGCCTGTGGTTGAGAAGTCGAACGGAACTGGTAAGAAGAGGCAGGGTTCGAAGGTGCCTAAATCTCCCAAGGCGAAGAAGCCAAAGAGAGGACCCCGTGTACCAAAGGACGAGAATACTCCTTCTGTTCAACGGACACCCAGGGCTCCAAAGAAAACTACGGAAATTGCAATTAATGGTATTGATTTGGATATTTCTAGTATCCCGATTCCTGTTTGTTCGTGCACCGGAGCACCTCAACAGTGTTATAGATGGGGCTCGGGTGGGTGGCAATCTGCATGTTGCACAACGGCTATATCGATATATCCTTTGCCTATGAGTACTAAACGGCGTGGTGCTAGAATAGCCGGAAGGAAAATGAGTATAGGAGCATTTAAGAAAGTTTTAGAGAAACTTGCAGCCGAGGGTTATAACTTTTCTAATCCAATTGATTTGAGGACTTACTGGGCAAAACATGGCACCAACAAGTTTGTTACAATCAGGTAG 867 0.451 MDGDNGLNITNWGYYEPVASFKSHLGLQLMPSMPEKPLLGGRNAAVLSGSNGAFHHRDIGLPQTTYPMDYMRDAWFSSQRDNKYMNMNMIPTNPPTSYSSMPETSSAHHIQMIRPPELVKEEKPMEEVPVVEKSNGTGKKRQGSKVPKSPKAKKPKRGPRVPKDENTPSVQRTPRAPKKTTEIAINGIDLDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07545 288 MobiDBLite consensus disorder prediction 117 182 - -
Vifa1g07545 288 Pfam GAGA binding protein-like family 1 288 IPR010409 -
Vifa1g07545 288 PANTHER - 1 288 IPR010409 -
Vifa1g07545 288 SMART GAGA_bind_2 1 288 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07545 Vifa-Chr1 1170774455 1170775321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07545 1 288 BBR or BPC Transcription factor family AT2G01930 50.836 6.25e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vifa1g07545 GAGA_bind 1.5e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07545 - - mtr:120575876 533.872