Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07544 ATGGTGGCTCCTCCTGATATTGCCCTTCTTTCCATGACTACTACTACTCACATCCATAAATCATCACAATCACAATCTCAATCAAACCCTAACACCACCACACCATCATCATCAACTTGGATGTGGAACCCTAAACAACAACATCATCAACATGAACATGAAGATGAAGACTCGTGGGAGGTAAGAGCTTTTGCAGAAGACACAAGGAACATCATGAACACAACATGGCCACCAAGATCCTACACCTGCTCTTTTTGTAGAAGAGAGTTCCGCTCAGCTCAAGCTCTTGGCGGTCATATGAACGTCCACCGCCGTGACCGTGCTCGTCTCCATCAAAATCAACCACCGTTAAATTCTTCTTCCACGTTCATACATATCCCTCCTCAGGAGCTTGTTAATGCTGGATTGTGCCTCTTTTACCATTCACCAAACCCTAATATCTCTTCCTTCAATCATTCTAATGGAGATTCTCCTTCAACTCTTCTCTCTATCTCATCATCTTATCCAACCAACAACTTGATGATGCAAACGCAAACGCAAACGCAAACTTGTTCTCCTACACCTTTTCATTTTCAGGCTAATTCAACCAGAAACTTTATCAATAATAGCATCTCTTCTTTTTCTAACAAACCTGCTATCTGCACCTCCATTGATGATAAGGTTCATGAAATTGAAGAACTCGATCTTGAGCTACGATTGGGGAGCAAGCCATCACCGGCATGA 723 0.426 MVAPPDIALLSMTTTTHIHKSSQSQSQSNPNTTTPSSSTWMWNPKQQHHQHEHEDEDSWEVRAFAEDTRNIMNTTWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNSSSTFIHIPPQELVNAGLCLFYHSPNPNISSFNHSNGDSPSTLLSISSSYPTNNLMMQTQTQTQTCSPTPFHFQANSTRNFINNSISSFSNKPAICTSIDDKVHEIEELDLELRLGSKPSPA 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07544 240 MobiDBLite consensus disorder prediction 16 45 - -
Vifa1g07544 240 Gene3D Classic Zinc Finger 72 125 - -
Vifa1g07544 240 SMART c2h2final6 81 103 IPR013087 -
Vifa1g07544 240 MobiDBLite consensus disorder prediction 16 57 - -
Vifa1g07544 240 Pfam C2H2-type zinc finger 81 105 - -
Vifa1g07544 240 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Vifa1g07544 240 PANTHER OS07G0101800 PROTEIN 53 237 - -
Vifa1g07544 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Vifa1g07544 240 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07544 Vifa-Chr1 1170746568 1170747290 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07544 37 237 C2H2 Transcription Factor Family AT4G17810 40.686 1.00e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g07544 zf-C2H2_6 4.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07544 - - tpra:123908941 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07544 1 1170746568 1170747290 Vifa1g07544 1 1170746568 1170747290 ECH