Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07539 ATGGAAGGAGGAGGAATGTTATCATCATCGTCATCACCACATTCTCAAAACTATATCTACAGAGAGTGTTTAAGAAACCATGCAGCCAGCCTCGGCAGCTACGCAACCGACGGCTGCGGTGAATTCACGGTCGACGACACTTCAGTATCAGCAGCCAACAGCCTCCAATGTGCAGCCTGTGGCTGCCACCGGAACTTCCACCGCAAGATAACCGCAACATATGCAACGATGGCGAATAACGCAATCGTTGCAATGTCAGATCAGGTGATGGAATATTCAGGTGGTGGAGGGAGTGGTGGGGACGGGAGGAGGAAGAGGTATAGGTCGAAATTCACGGCGGATCAGAAGGAGAAGATGCTGGGGTTTGCTGAGAAGCTGGGGTGGAAGCTGCAGAGGAAGGAACTTGATGAAGAGATTGAAAGGTTTTGTGAAAGTGTGGGTGTGAGTAGACAGGTTTTTAAGGTTTGGATGCATAATCATAAGAATTCTTGTTTCTCTAATTCTTCTGATCCTTCTACTGGTAATGCTAATTCTTCTCTTACTCAGTAG 549 0.4754 MEGGGMLSSSSSPHSQNYIYRECLRNHAASLGSYATDGCGEFTVDDTSVSAANSLQCAACGCHRNFHRKITATYATMANNAIVAMSDQVMEYSGGGGSGGDGRRKRYRSKFTADQKEKMLGFAEKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSCFSNSSDPSTGNANSSLTQ 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07539 182 FunFam Zinc-finger homeodomain protein 2 95 166 - -
Vifa1g07539 182 SUPERFAMILY Homeodomain-like 91 162 IPR009057 -
Vifa1g07539 182 NCBIfam homeobox domain, ZF-HD class 104 162 IPR006455 -
Vifa1g07539 182 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 20 69 IPR006456 -
Vifa1g07539 182 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 70 IPR006456 -
Vifa1g07539 182 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Vifa1g07539 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 162 - -
Vifa1g07539 182 Gene3D - 90 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07539 Vifa-Chr1 1169097242 1169097790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07539 20 163 ZF-HD Transcription Factor Family AT4G24660 42.690 1.86e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa1g07539 ZF-HD_dimer 3.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07539 - - csv:101204350 230.335