Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07520 ATGGCACCAAATGATGAGTCATGGACAAGTTGGTTGCGTGATTTGGATCCAGAAGATTACAAAATCATCAATGACATTAACATAGTACCTTTGTCACAAGATCATAACATCTTGCAACAATCTTTGTCCAGTGGTAGCCATTGTTCTCACACAACCTCAAGCACTATGAGTAATTCCTCAGGAGATGTTGTTAACAGCTTTGAGAGACCTACAAAGACACTCAAGACTAGTAGCCCTTCAAATATAGGGTACCCTTGTTTACAAAACAATGATTCTTCTCTTTCCTACACTATTTGTTTCAACAATGTGAATCCAGAACCAGAACTCCAACAACAAAAAGGTAAGATTTTGAATCATGGGAAGTGTTTAACCTCAAAAAAGGAACCTAAAAGAAGTATTCTAGAGAGCAAAAAGACTGATTCCGCTGCAAAACATGCTCAAGATCACATAATTGCTGAGAGAAAGAGAAGAGAAAAACTTAGTCAACAGTTCATAGCTCTTTCAGCACTGATTCCAGATTTAAAAAAGATGGATAAAGCTTCTGTGTTAGGAGATGCAATAAAGTATTTGAAACAGCTACAAGAACAAGTGAAGATATTGGAACAGAAGAATCAAAGGAAGAACATAGAATCTGTTGTTTATGTTGAGAAGACAAAGTCATGTTCTTCAGATGAAGATGTTTCAGTTTCAGACACTTCATCAGATTCTGGAAATGGTGGTAATTTTTGTCACCCGAATCAGTCACTGCCAGAGGTTGAGGCAAGAGTGTCTGAGAAAAACGTGCTGATAAGAATTCACTGTGAGAAAGAAAAGGGTATGTTGATGAAGATAATACAAGTGATAGAGGATCTTCATCTTTCTGTCATAAGTAATAGTACCTTACTTTTTGGAGCCACGAAACTTGACATAACCATCATAGCTGAGATGGATGATGAATTCAGGCTAAGTGTGCAGGAGCTAGTTAGAACCATTCGAGTTGGACTATTGCAATTCATGTAG 999 0.3734 MAPNDESWTSWLRDLDPEDYKIINDINIVPLSQDHNILQQSLSSGSHCSHTTSSTMSNSSGDVVNSFERPTKTLKTSSPSNIGYPCLQNNDSSLSYTICFNNVNPEPELQQQKGKILNHGKCLTSKKEPKRSILESKKTDSAAKHAQDHIIAERKRREKLSQQFIALSALIPDLKKMDKASVLGDAIKYLKQLQEQVKILEQKNQRKNIESVVYVEKTKSCSSDEDVSVSDTSSDSGNGGNFCHPNQSLPEVEARVSEKNVLIRIHCEKEKGMLMKIIQVIEDLHLSVISNSTLLFGATKLDITIIAEMDDEFRLSVQELVRTIRVGLLQFM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07520 332 Coils Coil 183 210 - -
Vifa1g07520 332 SMART finulus 150 199 IPR011598 GO:0046983
Vifa1g07520 332 Pfam Helix-loop-helix DNA-binding domain 148 194 IPR011598 GO:0046983
Vifa1g07520 332 CDD bHLH_AtNAI1_like 145 217 - -
Vifa1g07520 332 Gene3D - 133 208 IPR036638 GO:0046983
Vifa1g07520 332 PANTHER BHLH TRANSCRIPTION FACTOR 40 330 - -
Vifa1g07520 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Vifa1g07520 332 MobiDBLite consensus disorder prediction 43 66 - -
Vifa1g07520 332 MobiDBLite consensus disorder prediction 224 246 - -
Vifa1g07520 332 MobiDBLite consensus disorder prediction 225 245 - -
Vifa1g07520 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07520 Vifa-Chr1 1167827839 1167829167 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07520 69 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.132 9.63e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g07520 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07520 - - psat:127120520 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07520 1 1167827839 1167829167 Vifa4g02775 4 874634756 874636179 PCT