Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07518 ATGATGCAAATTGTGTCCCCCATCTATGTGCCTGAACTTGAGGAATTTGAGGATCTCAGTTTCTTTCACCAATACCCAATGGATTCTCTTTCATCTCCATTTGACAACTTTGGCTTTAACTTTGACAACAACTACCAAACAGCACCAAATTGTTTACCACTTGAAACTCATCCTGATGATCACTATGTTTCTCCAACAAGACCAACCAAGAAGATCAAGACATTAAGTGACACTCAACAAGCCACTGATTATTTGATAGCCTCAAACCCTAAACCTTCTTCTTCTTATTCATCGCCTCAACTCATTTCTTTTGAGCACTTCAATGCAACGCCAGTTGCTTCTAACAAACTTTTCAACCTCGATTATTCTGATGTAAAGCCTAAACTCGAGAAAGGATGTAAAGAAAACAAAGATTTTGCCGCAAATTATGATATCAGAGTGAATCAGACTAGGAACACAACTCAAGCAAAAGAACATGTATTGGCTGAAAGAAAACGAAGGGAAAAGCTCACCAGAAGTTTCATTGCTCTTTCTGCCATCCTTCCTGGTCTCAAGAAGATGGATAAAGCTTCTGTGTTGGGAGATGCAATAACCTATATGAAAAAACTACAAAAACGTTTGCATACACTAGAGGAACAAGCTGAAGACAACAGAAAAACTGGATCTGCAATACAAGTGAAGAGATCTGTTATCTTCACTGATAAACATGATGATGATGGCAGCAGCAACTCCAACAACAACCAGACACTTCCTGAAATCGAAGTAAGAGTTTCAAGAAAAGATGTACTCATCAAAATTCAATGTGAAAAACACAGTGGACGTGCCTCTACCTCTACGGTACTCGGCAAATTAGAAAACCTAAATCTCACAGTTCAAAGTAGTAACCTATTGCCCTTTGGAAACAACATTCTTGATCTAACTATTGTTGCTCAGATGAACGAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATAAGACAGGCACTAATCATCAATAATAATTAA 1011 0.3848 MMQIVSPIYVPELEEFEDLSFFHQYPMDSLSSPFDNFGFNFDNNYQTAPNCLPLETHPDDHYVSPTRPTKKIKTLSDTQQATDYLIASNPKPSSSYSSPQLISFEHFNATPVASNKLFNLDYSDVKPKLEKGCKENKDFAANYDIRVNQTRNTTQAKEHVLAERKRREKLTRSFIALSAILPGLKKMDKASVLGDAITYMKKLQKRLHTLEEQAEDNRKTGSAIQVKRSVIFTDKHDDDGSSNSNNNQTLPEIEVRVSRKDVLIKIQCEKHSGRASTSTVLGKLENLNLTVQSSNLLPFGNNILDLTIVAQMNEENCVTAKDLLGSIRQALIINNN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07518 336 Gene3D - 145 220 IPR036638 GO:0046983
Vifa1g07518 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Vifa1g07518 336 Coils Coil 200 220 - -
Vifa1g07518 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 218 IPR036638 GO:0046983
Vifa1g07518 336 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Vifa1g07518 336 SMART finulus 160 209 IPR011598 GO:0046983
Vifa1g07518 336 PANTHER BHLH TRANSCRIPTION FACTOR 22 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07518 Vifa-Chr1 1167101304 1167102651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07518 2 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.989 1.60e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g07518 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07518 - - cam:101507557 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07518 1 1167101304 1167102651 Vifa1g07518 1 1167101304 1167102651 ECH
Vifa1g07518 1 1167101304 1167102651 Vifa4g02774 4 873363947 873365509 PCT