Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07517 ATGATGAAAATTGTGACCCCCATCTATGTGCCTGAACTTGGATTTGAGGATCTCAGTTTCTTTCACCAATACCCTATGGATTCTTTTTCATCTCCATCTGACAACTTTGGCTTTAACTTTGACAACAACTACCAAACAACAACAAATTGTTTACCACTTGAAACTCATCCTGATGATCACTATGTTTCTCCAACAAGACCAACCAAGAAGATCAAGACATTAAGTGACACTCAACAAGCCACTGATTATTTGACAGCCTCAAACCCTAAACCTTCTTCTTCTTATTCATCGCCTCAACTCATTTCTTTTGAGCACTTCAATGCAACGCCAGTTATTTCTAACAAACTTTTCAACCTCGAAAAAGGATGTAAGGAAAACAAAGATTCTGCCTCAAATTATGATATCGGGGTGAATCAGACTAGGAACACAACTCAAGCAAAAGAACATGTATTGGCTGAAAGAAAACGAAGGGAAAAGCTCACCAGAAGTTTCATTGCTCTTTCTGCCATCCTTCCTGGCCTCAAGAAGATGGATAAAGCTTCTGTGTTGGGAGATGCAATAACCTATATGAAAAAACTACAAAAACGTTTGCATACACTAGAGGAACAAGCTGAAGACAACAAAAAAACTGGATCTGCAATACAAGTGAAGAGATCTGTTATCTTCACTGATAAACATGATGATGATGGCAGCAGCAACTCCAACAACAACCAGACACTTCCTGAAATCGAAGTAAGAGTTTCAAGAAAAGATGTACTCATCAAAATTCAATGTGAAAAACACAGTGGACGTGCCTCTACCTCTGCGGTACTCGGCAAATTAGAAAACCTAAATCTCACAGTTCAAAGTAGTAACCTATTGCCCTTTGGAAACAACATTCTTGATCTAACTATTGTTGCTCAGATGAACGAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATAAGACATGCACTAATCATCAATAATAATTAA 981 0.3843 MMKIVTPIYVPELGFEDLSFFHQYPMDSFSSPSDNFGFNFDNNYQTTTNCLPLETHPDDHYVSPTRPTKKIKTLSDTQQATDYLTASNPKPSSSYSSPQLISFEHFNATPVISNKLFNLEKGCKENKDSASNYDIGVNQTRNTTQAKEHVLAERKRREKLTRSFIALSAILPGLKKMDKASVLGDAITYMKKLQKRLHTLEEQAEDNKKTGSAIQVKRSVIFTDKHDDDGSSNSNNNQTLPEIEVRVSRKDVLIKIQCEKHSGRASTSAVLGKLENLNLTVQSSNLLPFGNNILDLTIVAQMNEENCVTAKDLLGSIRHALIINNN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07517 326 SMART finulus 150 199 IPR011598 GO:0046983
Vifa1g07517 326 Coils Coil 190 210 - -
Vifa1g07517 326 Gene3D - 136 210 IPR036638 GO:0046983
Vifa1g07517 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 206 IPR036638 GO:0046983
Vifa1g07517 326 PANTHER BHLH TRANSCRIPTION FACTOR 19 321 - -
Vifa1g07517 326 Pfam Helix-loop-helix DNA-binding domain 148 194 IPR011598 GO:0046983
Vifa1g07517 326 MobiDBLite consensus disorder prediction 55 77 - -
Vifa1g07517 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07517 Vifa-Chr1 1166708801 1166710174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07517 2 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.236 3.02e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g07517 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07517 - - cam:101507557 295.434