Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07507 ATGTCACAGAATCAGATTCCTGATCTTTCTCTACAAATTAGTCTCCCAAACAGTGCTGTTTCATCAATTTGCACAACTAATGAAGTTGATGATTTGGATTCACCTTTTGATATATGGAAAAATGTTCATGAAGGTTTCAAATCTGATAGTGATGGCTTTTCATCTTCATTCAAGAAAAATGGTGATACTTTTCAAAGAATTGATGATACTGAACTTTCATTAACAACAACAATAGCTCCTTCTGAAGCTGAGAGTCTTTGGAAGAGAAAAAGCTTTGTTAGATTAAGACCCTTTAATGGAATCCCTTACAATCCTTCAATATTAGAGAGAGATTCAAATTTTTCTCTTTATCCTTCTTGTTCTTCTGGTAATAATGGTTTTGAGGGTGTTAAGCAAGTTTCGAGGTTTAATGGAATAACTATGGACAGTTTAAGAGCTCACAAGTTTCAATACTTGAATTTGAATCAACATCAAATTCTACAACAACAACAGCAGCAACAACAACAAAAGTATAATCAGTTTGGAAATTCCGAGTTTGGAAATGGATTTGTAAGGTCAAGAATGATGATGCCAAGGCAACAAAGTAATAAGAGGAACACGAGGGCTCCAAGAATGCGGTGGACTAGTTCGCTTCATAATCGATTCGTTCACGCCGTTGAACTTCTCGGCGGCCATGAAAGAGCAACACCTAAGTCAGTTTTGGAGCTAATGGATGTGAAAGATCTAACACTAGCTCATGTGAAGAGCCATTTACAGATGTATAGAACTGTTAAAAACACTGACAAGCCAGCAGCTTCTTCAGATGGAGATGAGAATTTCATGTCGCTAACACCACCTCATAATCAAAATAATTTATCTCTAGATCATGATATTAGCTTCATTTCCAACAATCTATGGGGAAATTCATCTTCAAGTAAGGGAACATGGACACAAGGTAGTTCCAGAGACTTTGATGAGCATAGTACAGAAGAAATGCTATCATCTCATCTTATTGGGAACACTCCTCAGGGAAACAACTATATACAATCAAGAAGCTTCAAGGATCAAAACATAGATTGTCAGAAGAATCCAAACTTGGATTTCACTTTAGGGAGATCAAATTAA 1104 0.3623 MSQNQIPDLSLQISLPNSAVSSICTTNEVDDLDSPFDIWKNVHEGFKSDSDGFSSSFKKNGDTFQRIDDTELSLTTTIAPSEAESLWKRKSFVRLRPFNGIPYNPSILERDSNFSLYPSCSSGNNGFEGVKQVSRFNGITMDSLRAHKFQYLNLNQHQILQQQQQQQQQKYNQFGNSEFGNGFVRSRMMMPRQQSNKRNTRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDENFMSLTPPHNQNNLSLDHDISFISNNLWGNSSSSKGTWTQGSSRDFDEHSTEEMLSSHLIGNTPQGNNYIQSRSFKDQNIDCQKNPNLDFTLGRSN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07507 367 Pfam Myb-like DNA-binding domain 204 255 IPR001005 -
Vifa1g07507 367 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 7 366 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vifa1g07507 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Vifa1g07507 367 SUPERFAMILY Homeodomain-like 201 257 IPR009057 -
Vifa1g07507 367 FunFam Myb family transcription factor 201 259 - -
Vifa1g07507 367 Gene3D - 202 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07507 Vifa-Chr1 1165188998 1165201172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07507 63 365 G2-like Transcription Factor Family AT5G16560 38.838 2.96e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g07507 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07507 - - cam:101493712 443.351