Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07502 ATGGAAAAACAAAAGCAAAACCTCATTCTCATTCTTATTTTTTCACTACTATGTTCAAATGGAAACACCTTTTCACTCTCAAGAGACTATGAAATTCTTCTCCATGTCAAAAACACACAAATCAACGACCAAAACAAAAGCCTCAAAGATTGGCTTCCAAACACATACCACTATCCTTGTAATTGGACAGGAATAACCTGCGACTCGCGAAACAAATCAGTTACATCCATCGACCTCTCCGAAATCGGTATCTACGGAGATTTTCCCTTCAATTTCTGCCGCATTCCATCTCTCCAAAACCTTTCTCTTGCTGTCAACTTCCTCGGCAACTCAATCTCCTCACATTCCATCTTACCATGTTCCCACCTTCATCTGTTAAACATCTCCGACAACTTGTTCGTCGGAAACTTACCGGAATTCAACTCAGAAACCTTCCAACTAAGAGTACTCGACCTTTCATTAAACAACTTCACCGGCAACATCCCGGCGAGTTTCGGCCGGTTTCCTCGACTGAAGACTCTCATTTTGTCTTCCAACCTTTTCACCGGAACGATTCCTTCATTCTTAGGTAATCTAACCGAGTTAACTCACTTTGAACTCACCTACACCGAAACAATGAAACCAGGTTCTATACCTTCCGAACTAGGAAACCTCACTAAGCTACAATTTCTCTACCTCTCCGACATAAACCTCGTAGGTAACATACCAGATTCCGTCGGAAACCTTATCTCCATCGAAAACTTTGATTTGTCTCGAAACTCTTTGTCTGGTAAAATCCCATACGCCATTTCTGGAATGAAAAATGTGAAACGAATTATACTTTTCGAGAACAACCTTTCCGGTGAAATTCCACAAGGTTTATCAAACCTCACAAGTTTGTCTCTATTAGACCTCTCTCAGAATGCACTCACCGGAAATTTTTCTCAGGAACTCGGTTCATTGAATCTTTCTATACTGCACTTGAACGACAATTTTCTCAGCGGAGAAGTTCCAGAAAGTTTAGCTTTGAATCCAAACTTGCTTAATTTGAGTCTTTTCAACAATAGCTTTTCAGGGAAACTATCAAAGGGTCTTGGGAAAAACTCTGCATTGAGAAATATCGATGTTTCAACGAACAACTTCACCGGAGATTTACCTGAGTTTCTCTGCGTAAGGAAGAAACTTCAGCGACTTGTTACATTCAACAATCGATTTTCTGGGTCTATTCCTGATGAGTTTGGCGAGTGTGATTCCCTTATTTATGTAAGAATTGAGAATAATGAGTTTTCTGGTTCAGTTCCAGCGAGATTCTGGAACCTTCCGGAGCTTGATGTTGTGAAAATGGATCACAACAAGTTCGAAGGTTCAGTCTCTGGTTCTGTCTCTCGAGGAATCACAAAACTGATTTTATCGGGTAACAGGTTTTCCGGTGAGTTTCCGGTTGGAGTCTGCGAGCTTGTTGAGCTAGTTGAGTTCGATATTGGAAATAACCTGTTCACAGGTGAAGTTCCTTCCTGCATAACCGGTATGAAAAAGTTGCAGAAGCTTGAAATGCAGGAGAATACTTTCTCCGGTGAGATTCCCGGGAATGTAAGTTCCTGGACTGAATTAACCGAGCTAAATTTGTCGCATAACCGGTTCACCGGTTCAATTCCACCAGAGCTTGGGAATTTACCTGATTTAACATACCTTGATCTCTCTGTTAACTTTTTAACAGGGAAGATTCCGGTGGAGTTAACGAACCTAAAGTTGAATCAGTTCAATGTTTCTGATAACAAATTGTCTGGCGAGGTTCCTTCGGTTTTTAACAGTCGAGTTTATTTGTCGGGTTTAATGGCTAACCCGAGTTTATGTAGCAATGTTATGAAAACCATTAATCCTTGTTCAAAACACAAACCCTTTTCTGTTGTTGTTATAATTGTTTTAGTTGCTTCTGTTGTGTTGATTTTTGCTTCTGTTTTGTGGTACTTGAAGAGAAAGTCGAAATTTACTGTTGGTAAATCGAAACGGGCTTATAGGACAATCTCTTTTCAGAGAGTTGGGTTCAATGAGGAAGATATAATTCCATCTTTAACTAGTGAGAATTTGATTGGAAGAGGTGGGTCGGGTCTGGTTTATAAGGTGAAGGTGAAAACAGGTCAAGTAGTTGCAGTGAAAAAACTTTGGGGTGGAAATGGAAGGCAGAAACCTGAGATGGAATTGGTTTTTAAGTCAGAGATTGAAACATTGGGTAGAATTAGGCATGCTAATATACTGAAACTTTTGTTTTGTTGTAGTTCTGATGATTTCAGAATATTGGTTTATGAGTATATGGAGAATGGAAGTTTAGGTGATGTTTTGCATGAGGAAAAGTGTGATGAGTTGTTGGATTGGTCTAAGAGATTTAGAATTGCTCTAGGTGCTGCTCAAGGGTTGGCTTATTTACACCATGATTGTGTTCCTGCTATTGTTCATAGGGATGTGAAGAGTAATAACATATTGCTTGATCATGACTTTGTACCTCGCATTGCTGATTTTGGAATAGCAAAGACATTGCAAATTCAAGGAAGTGAAAACGCGATGTCTAGAATTGCTGGTTCGTGTGGTTACATTGCTCCCGAGTATGGCTATACATTGAAAGTGACTGAGAAGAGTGATGTGTATAGTTTTGGCGTGGTGCTGATGGAATTAATAACCGGGAAGAGGCCAAATGACTCGTGTTTTGGTGAGAACAAAGATATTGTGAAGTGGGTCACTGAGATTTCTCTATCAACATCTCATGAAGGAGTTCAAGATTGCGTTGTGACACAGATTGTGGACTCGAGATTGAACTTAGACACTAGTGATTATGAAGAAGTTGAAAAGGTATTGAATGTTGCTCTACTTTGTACCTCTGCATTTCCAATTAGCAGACCTTCAATGAGAAGAGTTGTTGAATTTCTTAAGGATCATAAAGTAGCTCATCCCAAGTCATGA 2934 0.3978 MEKQKQNLILILIFSLLCSNGNTFSLSRDYEILLHVKNTQINDQNKSLKDWLPNTYHYPCNWTGITCDSRNKSVTSIDLSEIGIYGDFPFNFCRIPSLQNLSLAVNFLGNSISSHSILPCSHLHLLNISDNLFVGNLPEFNSETFQLRVLDLSLNNFTGNIPASFGRFPRLKTLILSSNLFTGTIPSFLGNLTELTHFELTYTETMKPGSIPSELGNLTKLQFLYLSDINLVGNIPDSVGNLISIENFDLSRNSLSGKIPYAISGMKNVKRIILFENNLSGEIPQGLSNLTSLSLLDLSQNALTGNFSQELGSLNLSILHLNDNFLSGEVPESLALNPNLLNLSLFNNSFSGKLSKGLGKNSALRNIDVSTNNFTGDLPEFLCVRKKLQRLVTFNNRFSGSIPDEFGECDSLIYVRIENNEFSGSVPARFWNLPELDVVKMDHNKFEGSVSGSVSRGITKLILSGNRFSGEFPVGVCELVELVEFDIGNNLFTGEVPSCITGMKKLQKLEMQENTFSGEIPGNVSSWTELTELNLSHNRFTGSIPPELGNLPDLTYLDLSVNFLTGKIPVELTNLKLNQFNVSDNKLSGEVPSVFNSRVYLSGLMANPSLCSNVMKTINPCSKHKPFSVVVIIVLVASVVLIFASVLWYLKRKSKFTVGKSKRAYRTISFQRVGFNEEDIIPSLTSENLIGRGGSGLVYKVKVKTGQVVAVKKLWGGNGRQKPEMELVFKSEIETLGRIRHANILKLLFCCSSDDFRILVYEYMENGSLGDVLHEEKCDELLDWSKRFRIALGAAQGLAYLHHDCVPAIVHRDVKSNNILLDHDFVPRIADFGIAKTLQIQGSENAMSRIAGSCGYIAPEYGYTLKVTEKSDVYSFGVVLMELITGKRPNDSCFGENKDIVKWVTEISLSTSHEGVQDCVVTQIVDSRLNLDTSDYEEVEKVLNVALLCTSAFPISRPSMRRVVEFLKDHKVAHPKS 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07502 977 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 246 966 - -
Vifa1g07502 977 Gene3D Ribonuclease Inhibitor 26 313 IPR032675 -
Vifa1g07502 977 ProSiteProfiles Leucine-rich repeat profile. 529 552 IPR001611 GO:0005515
Vifa1g07502 977 FunFam leucine-rich repeat receptor-like protein kinase TDR 764 977 - -
Vifa1g07502 977 Gene3D Phosphorylase Kinase; domain 1 660 763 - -
Vifa1g07502 977 Gene3D Transferase(Phosphotransferase) domain 1 764 976 - -
Vifa1g07502 977 SMART serkin_6 684 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07502 977 SUPERFAMILY Protein kinase-like (PK-like) 680 967 IPR011009 -
Vifa1g07502 977 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 307 - -
Vifa1g07502 977 FunFam Leucine-rich repeat receptor-like protein kinase TDR 312 623 - -
Vifa1g07502 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Vifa1g07502 977 Gene3D Ribonuclease Inhibitor 314 622 IPR032675 -
Vifa1g07502 977 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Vifa1g07502 977 SUPERFAMILY RNI-like 76 423 - -
Vifa1g07502 977 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vifa1g07502 977 ProSiteProfiles Protein kinase domain profile. 684 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07502 977 SUPERFAMILY L domain-like 372 597 - -
Vifa1g07502 977 Pfam Leucine Rich repeats (2 copies) 528 568 IPR025875 -
Vifa1g07502 977 Pfam Protein kinase domain 686 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07502 Vifa-Chr1 1164228470 1164231566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07502 29 971 Receptor kinase-like Gene Family AT5G65710 53.257 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g07502 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07502 - - tpra:123909546 1536.55