Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07487 ATGGCTCTTATTAACAACAATCAAGATTCCAATAACTCACACCTTCACCTTGTTCTAGGCTTATCTTTAACCACTCCAAACGAAACAACCACCACCACCGTCGCAAATCCCTACTATTCCTCCTCCAACGAGCCATCCTTAACTGTTACTGTTTCTTCGTTCTCCAATGGGAGAATACTTCACGTGAAAAGGGAGAGAGATGAAGACGAAGACATAGTAGAAGAAGAAGAAAGAGTTTCTTCAAGAATAATTAGCGACGAAGATGAAGATGGAACAAACGCTAGAAAGAAACTTAGGCTTACCAAAGAACAATCTCTTTTACTTGAAGAAAGCTTCAAACTACACAGCACTCTCAATCCTAAACAAAAACAAGCTTTAGCGAAACAATTGAGTCTAAGGCCACGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAACAAACGGAGGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAACATTAACAGATGAAAACAGGAGGCTAAAGAAGGAGCTTCAAGAGCTGAAAGCATTGAAACTATCTTCACAACCTTTATACATGCCTATGCCGGCGGCTACTCTTTCTATTTGCCCGTCCTGCGACCGGCTTGGCGGCCGTGTCGCAGAAGGTGGTGGATCGAATAAGAAGATTATCACTGCTTTTACGATGGCTCCTAATTCTCCCTTTTATAATCCTTTCAATAATCCTTCTGCTGCATGTTAA 741 0.4143 MALINNNQDSNNSHLHLVLGLSLTTPNETTTTTVANPYYSSSNEPSLTVTVSSFSNGRILHVKRERDEDEDIVEEEERVSSRIISDEDEDGTNARKKLRLTKEQSLLLEESFKLHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLSSQPLYMPMPAATLSICPSCDRLGGRVAEGGGSNKKIITAFTMAPNSPFYNPFNNPSAAC 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07487 246 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Vifa1g07487 246 SUPERFAMILY Homeodomain-like 87 152 IPR009057 -
Vifa1g07487 246 Pfam Homeobox associated leucine zipper 151 185 IPR003106 GO:0006355|GO:0043565
Vifa1g07487 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 18 214 - -
Vifa1g07487 246 FunFam Homeobox-leucine zipper protein 18 80 156 - -
Vifa1g07487 246 CDD homeodomain 95 152 IPR001356 GO:0003677
Vifa1g07487 246 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Vifa1g07487 246 Coils Coil 157 187 - -
Vifa1g07487 246 SMART HOX_1 93 155 IPR001356 GO:0003677
Vifa1g07487 246 Pfam Homeodomain 95 149 IPR001356 GO:0003677
Vifa1g07487 246 Gene3D - 88 156 - -
Vifa1g07487 246 SMART halz 151 194 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07487 Vifa-Chr1 1162295066 1162296161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07487 9 246 Homeobox Transcription Factor Family AT4G37790 55.516 5.33e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g07487 Homeodomain 8.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07487 K09338 - gmx:100795135 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07487 1 1162295066 1162296161 Vifa4g02760 4 863270766 863271818 PCT