Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07484 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTAAAAAAAGGTCCATGGTCACCTGAAGAAGATACCAAACTCAAGTCTTACATAGAGAAGAATGGTACTGGTGGAAATTGGATAGCTCTTCCTCAGAAGATAGGACTTAAGAGATGTGGAAAAAGCTGTCGTCTTAGATGGTTAAATTATCTTCGACCAAATATCAAACATGGTGGTTTCTCTGAGGAAGAAGATGATATTATCTGCAGTCTCTATGTTAGTATTGGAAGCAGGTGGTCTATCATAGCAGCACAATTACCGGGACGAACCGATAACGATATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTTCTTGGAAAACAAAGGAAGGAGCAACAAGCTCAAGCTCAAGCTCAACGAGCTCGGCGGGTTAGCAACATGAAACAAGAGATGAAAAGAGAGACAGGTAATCAGAATTTGATGGTATCAGCAGCTTCTGGTGTTAATACTATGAGTACTACTACTCCTTATTGGCCTTTAGAGTATTCTTCTGTTCATCCTATGCCAGTTTCAAATTCATCCATAATTGACTATGATCTCAACAATCAAACTTCCTTCACAAGCATAATGAACATGACCACAAACCCTTTAGCCATGGTGAGTAATGCAAACAATATATTTCAAGGGTTTGAAAATTTTCCAAGTGATTTAACTGAGCTTGTATGTGAGAACCAACAAGTAATGAATAGAACAATTGATGGTTTTTATGGAATGGAATCTATTGATATGAGCAATGGTGGTGGTAGCACAATAACAACAACAACTTCAACAGAAAGTACTAGTTGGGGAGATATGAACTCTTTGGTATATTCACCTTTGGTTTCTGACTATGAAGGTTGTTGTCAACAAGGATCAATCATTCCTCAAGATGCTGCTGTTTTTGAAGAGTCTAGGTATTTTGGAATGCAAATGCAATAA 957 0.3835 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQAQAQRARRVSNMKQEMKRETGNQNLMVSAASGVNTMSTTTPYWPLEYSSVHPMPVSNSSIIDYDLNNQTSFTSIMNMTTNPLAMVSNANNIFQGFENFPSDLTELVCENQQVMNRTIDGFYGMESIDMSNGGGSTITTTTSTESTSWGDMNSLVYSPLVSDYEGCCQQGSIIPQDAAVFEESRYFGMQMQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07484 318 CDD SANT 71 113 IPR001005 -
Vifa1g07484 318 PANTHER OS09G0431300 PROTEIN 1 259 - -
Vifa1g07484 318 Gene3D - 70 146 - -
Vifa1g07484 318 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa1g07484 318 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vifa1g07484 318 Gene3D - 7 68 - -
Vifa1g07484 318 FunFam Transcription factor RAX3 70 150 - -
Vifa1g07484 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vifa1g07484 318 Coils Coil 127 147 - -
Vifa1g07484 318 CDD SANT 16 62 IPR001005 -
Vifa1g07484 318 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vifa1g07484 318 SMART sant 13 64 IPR001005 -
Vifa1g07484 318 SMART sant 67 115 IPR001005 -
Vifa1g07484 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa1g07484 318 FunFam Transcription factor RAX3 7 68 - -
Vifa1g07484 318 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vifa1g07484 318 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07484 Vifa-Chr1 1160297645 1160298828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07484 1 284 MYB Transcription Factor Family AT3G49690 49.841 3.96e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g07484 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07484 K09422 - gmx:106795158 387.882