Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07466 ATGGCGCTCGTCCACCGCCGCCGCCATCCCAACCTCCGTCTCCCAGAAATCTCCGACCACCGTCCTCGTTTCCCTGTCCCCCTTCCTTCTAACATCTACAAACAATCATCCTCCGCCGCCTGTGACACCCTTGCTCCCGCTGACTTCGAGAAACTCGCCGTCCTCGGTCACGGCAACGGAGGCACCGTCTACAAAGTCCGCCACAAAGTCACCTCCACTATCTACGCTCTAAAAGTCAACCACAACGACTCCGACCCCACCACGCGCCGCCGTACACTAGCTGAAATCAACATCCTCCGCCGCGCCACAGATTGTCCTAACATCGTTAAATTCCACGGTTCCTTCGAGAAACCCACCGGCGACATCGCGATTCTGATGGAGCTTATGGACTCAGGCAGCCTCGAAACCGCTCTCAAAACAAACGGAACATTCTCCGAATCAAAACTCTCCGAAGTAGCGCGTGAAGTTCTCAACGGCTTATCGTATCTCCACGCGCGTAACATAGCACACCGTGACATTAAACCTTCGAACATCCTCGTTAACAACAAAAACGAGGTTAAGATAGCAGATTTTGGTGTTAGTAAATTGATGGGTCGCACGCTTGAAGCATGCAACTCTTACGTTGGCACGTGTGCTTATATGAGTCCGGAACGGTTTGACCCGGAAGTTTATGGCGGGAACTATAATGGTTTTTCAGCTGATATATGGAGTTTGGGTTTAACCCTATTTGAACTTTATGTGGGTCATTTTCCTTTTCTTCAATCGGGTCAACGACCCGATTGGGCTATGTTGATGTGTGCGATTTGTTTCTCCGATCCACCGAGTCTACCCGATACCGCTTCATCGGAGTTTCGAGGCTTTGTTGAGTGTTGCCTTAAAAAGGAATCCGGTGAGCGGTGGACGGCAGCTCAATTATTGACCCATCCGTTTTTGTGTAAAGAAATGGATAGTTGTTAA 957 0.5016 MALVHRRRHPNLRLPEISDHRPRFPVPLPSNIYKQSSSAACDTLAPADFEKLAVLGHGNGGTVYKVRHKVTSTIYALKVNHNDSDPTTRRRTLAEINILRRATDCPNIVKFHGSFEKPTGDIAILMELMDSGSLETALKTNGTFSESKLSEVAREVLNGLSYLHARNIAHRDIKPSNILVNNKNEVKIADFGVSKLMGRTLEACNSYVGTCAYMSPERFDPEVYGGNYNGFSADIWSLGLTLFELYVGHFPFLQSGQRPDWAMLMCAICFSDPPSLPDTASSEFRGFVECCLKKESGERWTAAQLLTHPFLCKEMDSC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07466 318 Pfam Protein kinase domain 49 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07466 318 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g07466 318 Gene3D Transferase(Phosphotransferase) domain 1 132 317 - -
Vifa1g07466 318 ProSiteProfiles Protein kinase domain profile. 49 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07466 318 FunFam Mitogen-activated protein kinase 2 131 317 - -
Vifa1g07466 318 Gene3D Phosphorylase Kinase; domain 1 30 130 - -
Vifa1g07466 318 SMART serkin_6 49 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07466 318 FunFam Dual specificity mitogen-activated protein kinase kinase 33 129 - -
Vifa1g07466 318 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 31 313 - -
Vifa1g07466 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vifa1g07466 318 CDD PKc_MAPKK_plant_like 47 311 - -
Vifa1g07466 318 SUPERFAMILY Protein kinase-like (PK-like) 47 313 IPR011009 -
Vifa1g07466 318 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07466 Vifa-Chr1 1156108746 1156109702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07466 1 315 MAP Kinase Kinase Gene Family AT1G73500 57.862 1.83e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vifa1g07466 Pkinase 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07466 K20604 - gmx:100804100 519.62