Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07465 ATGAAGTCCATAGAAAATTTTGATTCCATTAACGTAAACAATCAAAATAGTAACATGTTTGGTGTCTCTTTCTCTCCTTCATATGCTGCTGCTGCTGCTGAAGCAGTTCCAACAAGCTTCCATTATCATCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAGGTGAACATGTTGGATTGTATTCAGCCTTTCCTTTCATGAATGATGGATCCATGTATGGTATTGAAGCTTTGAGTAGATCACAATCACAAGCAATGAGTATTCATCCATATGAATGCAGTAGCAAAGAAGCAATGCAACTCAACTCGGATGTTTTTTTGTGTAACCAAACTTTAAGCCATAAACCAAACATTAATCCAAATAACATAGTTCATGTACAAGAGAATATGAGCTTGTTTGGGAGTTTGGCGGAGCACCAGGAGCAACAACTTTCGTGTTACGGCACTTTACGAAACAATAATATGATGTTAGAACTAGAAGGGTTGATGAAAAATCAGGTGAAAGACAGTGTCCAGCTCTCAAATATAATTGAGGATGGAGTTTTTGATGTGAAAAGATGGGTCTCAAGGGATATTAAATGTATTAGTTCTAACTCACAATCAAGCTGTGTTACTAGTTTACAAGAAACATCACATACTGATTCTGTTTCTAATGATACTATGAAAAGGAAGAATCAAAACCAAACTTTAGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACGGGTAGATATGAAGCGCATCTATGGGATAATAGTTGTAAGAAAGAGGGCCAAGCTAGGAAAGGAAAGCAAGGTGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGTCCCTCCACTCGTATAAATTTCCCACTAGAAAATTATCAAAAAGAACTTGATGTTATGAACAAAATGACTAGACAAGAATACGTTGCTCATTTAAGAAGGAAAAGCAGTGGTTTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGCAGACACCATCAACATGGAAGGTGGCAAGCTAGAATAGGTAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCACTACTCAAGAGGAAGCTGGTGAAGCTTATGATATAGCAGCTATAAAATTCAGAGGAGAAAATGCTGTGACTAATTTTGATATAACAAGATATGATGTTGAAAAAATAATAGCAAACAGTAACCTTCTTAGCAGTGAAGAAGCTAGAAGAAACAAAAAAGTTGATGATGGAATAATTAACATTAAAGAAGAAGACATTAATCCAATGCAGAAGAGGTGCAAAATCCAATCATTTTCAGTAGGTTTAGATGATATATATCATCAAGAAATTGAAGAATATTCGAATAGCGTATTGAATATGTCGAATGCTTCTTCGGTTGTGACAAGCTTAAGTAACTCAAGAGAAGAAAGTCCTGAACATAGAACAAGCTTGCCATTGCCAGTGCTCTTTGGAATGGATTCAACAGCTTCAATGCCTTCATTTTCTAGTTTGCCTCAGATGCCACTGTCGGTTTTCGCTGCGTGGACCGATGCATAA 1587 0.3705 MKSIENFDSINVNNQNSNMFGVSFSPSYAAAAAEAVPTSFHYHPTPLHNYGFYYGLEGEHVGLYSAFPFMNDGSMYGIEALSRSQSQAMSIHPYECSSKEAMQLNSDVFLCNQTLSHKPNINPNNIVHVQENMSLFGSLAEHQEQQLSCYGTLRNNNMMLELEGLMKNQVKDSVQLSNIIEDGVFDVKRWVSRDIKCISSNSQSSCVTSLQETSHTDSVSNDTMKRKNQNQTLGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYQKELDVMNKMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGENAVTNFDITRYDVEKIIANSNLLSSEEARRNKKVDDGIINIKEEDINPMQKRCKIQSFSVGLDDIYHQEIEEYSNSVLNMSNASSVVTSLSNSREESPEHRTSLPLPVLFGMDSTASMPSFSSLPQMPLSVFAAWTDA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07465 528 Gene3D AP2/ERF domain 338 399 IPR036955 GO:0003700|GO:0006355
Vifa1g07465 528 Gene3D AP2/ERF domain 238 304 IPR036955 GO:0003700|GO:0006355
Vifa1g07465 528 FunFam AP2-like ethylene-responsive transcription factor 337 399 - -
Vifa1g07465 528 ProSiteProfiles AP2/ERF domain profile. 239 302 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 173 428 - -
Vifa1g07465 528 CDD AP2 238 302 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 SMART rav1_2 239 308 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 SMART rav1_2 338 403 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 FunFam AP2-like ethylene-responsive transcription factor ANT 238 304 - -
Vifa1g07465 528 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 SUPERFAMILY DNA-binding domain 337 398 IPR016177 GO:0003677
Vifa1g07465 528 CDD AP2 337 399 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 Pfam AP2 domain 239 294 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 ProSiteProfiles AP2/ERF domain profile. 338 397 IPR001471 GO:0003700|GO:0006355
Vifa1g07465 528 MobiDBLite consensus disorder prediction 212 236 - -
Vifa1g07465 528 SUPERFAMILY DNA-binding domain 238 304 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07465 Vifa-Chr1 1155782505 1155785500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07465 49 528 AP2-EREBP Transcription Factor Family AT4G37750 44.365 4.21e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa1g07465 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07465 K09285 - gmx:100792451 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07465 1 1155782505 1155785500 Vifa4g02750 4 857249811 857252780 PCT