Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07463 ATGAATAGTTTTGTTGTTGTTGATGATCATGTCAAGTACAAAGAAGATGAAGAACAACAAGAATTGGAATTGGAACAAGAAGAACAAAATGGTGTTCATGAACATGGTGTTCATGTAGAGGAGAATAGTGAGATTCTTAAGAGGAGAATCTCTAATCATCCACTTTATGAGTTTCTTGTTGAAGCACACTTGGATTGTTTGAAGGTTGGTGACATTTCTAACTTGGAGATAGAGAAAAAAGACAAGAAGAAAACAATGAAGAAACAAAACTTGGATATGTTAAGCCAATCTGAACTTGATCTCTTCATGGAAGCATATTGTTTGGCACTTAATAAGCTAAAAGAAGCAATGGAAGAACCACAACAGAATTCAATGGCTTTCATAAACAACATGCATTCACAACTTAGGGAGCTAACTCAAGCAACCACACCTGCACCTACTGAATCACCTGGTACTACATCTTCAAGTGAATGCACATTCAGAAGAAACCCAACAATTTAA 501 0.3573 MNSFVVVDDHVKYKEDEEQQELELEQEEQNGVHEHGVHVEENSEILKRRISNHPLYEFLVEAHLDCLKVGDISNLEIEKKDKKKTMKKQNLDMLSQSELDLFMEAYCLALNKLKEAMEEPQQNSMAFINNMHSQLRELTQATTPAPTESPGTTSSSECTFRRNPTI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07463 166 SMART KNOX1_2 44 89 IPR005540 GO:0003677|GO:0005634
Vifa1g07463 166 SMART KNOX2_2 89 140 IPR005541 GO:0003677|GO:0005634
Vifa1g07463 166 Pfam KNOX2 domain 96 139 IPR005541 GO:0003677|GO:0005634
Vifa1g07463 166 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 23 143 - -
Vifa1g07463 166 Coils Coil 72 92 - -
Vifa1g07463 166 MobiDBLite consensus disorder prediction 141 166 - -
Vifa1g07463 166 Coils Coil 10 30 - -
Vifa1g07463 166 Pfam KNOX1 domain 46 70 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07463 Vifa-Chr1 1155347669 1155350884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07463 44 141 Homeobox Transcription Factor Family AT4G08150 35.238 8.04e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07463 - - psat:127102620 252.292