Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07462 ATGCTCTCTTCACTTTCAGTTTCGGATTTCACCGTGTTAGACGAGGTTTTAACACTGTGGGAATACGATTACCCTAACGCGTTCTCACCCCCCATCATTCCCACCAGCCCTAAGCTCACTTCAAGCTCCGGTTCAGGTGAACCAAACGAAAAACCGGTATTAGAAAATTCAAACCGGAACATGGAGGACCGAAAGAAGAGAAGAATGATGTCAAACCGGGAATCAGCACGGAGGTCACGTATGCGTAAACAGAGACACCTTGAGAATCTACGGAACCAGTTGAACCTATTTCGGGTTGAAAACCGGGAATTGAAAAATGGTTTGCAGTTCTTAATGCTCCACTGTAATCGTTTACGAACTGAAAACGAGTGGCTCCGGTTAGAACGAACCGTGTTGGGTCAAAAGTTGTCAAACATAAGTCAAAGTTTGGTTTTTCAACCATTCTCATCTGCATGGCCATGCAATATTGTTACAATGGAATGA 483 0.441 MLSSLSVSDFTVLDEVLTLWEYDYPNAFSPPIIPTSPKLTSSSGSGEPNEKPVLENSNRNMEDRKKRRMMSNRESARRSRMRKQRHLENLRNQLNLFRVENRELKNGLQFLMLHCNRLRTENEWLRLERTVLGQKLSNISQSLVFQPFSSAWPCNIVTME 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07462 160 SUPERFAMILY Leucine zipper domain 64 112 IPR046347 GO:0003700|GO:0006355
Vifa1g07462 160 PANTHER BZIP TRANSCRIPTION FACTOR 44 30 146 - -
Vifa1g07462 160 Gene3D - 62 114 - -
Vifa1g07462 160 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Vifa1g07462 160 MobiDBLite consensus disorder prediction 31 85 - -
Vifa1g07462 160 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 125 IPR004827 GO:0003700|GO:0006355
Vifa1g07462 160 Pfam bZIP transcription factor 62 123 IPR004827 GO:0003700|GO:0006355
Vifa1g07462 160 SMART brlzneu 60 124 IPR004827 GO:0003700|GO:0006355
Vifa1g07462 160 CDD bZIP_plant_GBF1 65 116 IPR045314 GO:0003700|GO:0006355
Vifa1g07462 160 FunFam BZIP transcription factor 62 113 - -
Vifa1g07462 160 Coils Coil 73 107 - -
Vifa1g07462 160 MobiDBLite consensus disorder prediction 56 77 - -
Vifa1g07462 160 MobiDBLite consensus disorder prediction 33 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07462 Vifa-Chr1 1155165966 1155166448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07462 22 145 bZIP Transcription Factor Family AT3G49760 41.129 9.18e-26 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g07462 bZIP_1 1.5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07462 - - gmx:102661188 182.57