Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07456 ATGAGCTTGCAAATGAGACGAGAAAGAAGGGAAGGGTCGAGGTTCCCTTCACAACGCCCTCCTCGGCAATTATGGGTTCCGAAAGGAACGGGAGGTTCAGCTTCAACAACCTCTGAAACCACCGCGGAAGCCACTGCCACCACCACTGCCTCAATCACTGCCACTGCAAGCGTTGCTCATCCTACAGGTTTGCAGTCTCGTGAGAAGAACACTAATGGTGATGGTGGTTCGTCCAATCAAGGGGCTGTTAGTGCTCCACCGTTGGCTAGGCATAGAAGTAACCATCATGGTTCTCATAGGGTGGAAAGGGAACATGTTGCTCATCATGTTGAAAGGGGACATGTTGTGCATCGTGTGGAAAGGGAACATGTTGCTCATCGCGTGGAGAGGGGACATGTTGGTCATCATGTGGAAAGGGGACATGTTGCACATAGGAGTGACAGGGGAAGTGATAGAGGGAGGAGTGGGAATATGTTGGGGAGGGAATACGGATCGAGGGACTCTAGTTTGCCCCAATTGGTGCAGGAGATTCAAGAGAAGCTCACGAGAGGTACTGTGGAGTGTATGATTTGCTATGATATGGTTCGTAGGTCTGCACCTGTTTGGTCTTGCTCCAGCTGCTACTCTATCTTTCACCTGAACTGTATCAAGAAGTGGGCTCGTGCGCCCACCTCGGTTGATTTATCAGCAGAGAAGAATCTAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTTTGTGCAACATACGTCTTCAAGGGATATAAAATATGTATGCTTTTGCGGAAAGAGAGTAGACCCTCCATCTGATTTGTATTTGACCCCTCATTCGTGTGGTGAACCGTGTGGAAAGCCTCTTGAGAAGGAGGTGTTTGGTACGGAGGGGAGAAAAGATGAGCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCGGGTCCGTGTCCTCCGTGTAAAGCATTTGCCCCTCCTCGTTTGTGCCCTTGTGGGAAGAAACGAATCGCCACTCGTTGCTCTGATCGGCAGTCTGATCTTACTTGCGGTCAGCGCTGTGATAGGCTTGTTGATTGTGGACGTCATCGCTGCGAAAATGCTTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTCATCAATGCATCTTGTTTTTGCAGTAAAATGGAGCAGGTACTTTTTTGTGGGGAGATGGCTATGAAAGGTGAATTTAAACCCGAAGGTGGAGTTTTTTCTTGTGGTTCCAATTGTGGAAAGGAACTTAGTTGTGGTAATCATATCTGCCATGAAGCTTGTCATCCAGGCAGCTGTGGCGAATGCGAATTTTTACCAAGCCGGGTTAAGACATGCTGTTGTGGAAAAACACAGCTGGATGCAGAACGGAAGAGTTGTGTGGATCCAATACCTACCTGCTCACAAGTATGTGGCAAGCACCTTTGTTGTGGGATACATAATTGTCCGGAGCCATGCCATGTTGGGGACTGTCCGCCATGTAAGGTCCAAATTTCACAGAAATGCCGCTGTGGCTCAACTTCCCGAACTGTGGAATGCTATAAAACAATATCAGAGAATCAGAAATTTACTTGTGAAAAGCCGTGTGGGGCAAAGAAAAATTGTGGACGGCACCGATGCAACGAAAAGTGTTGTCCATTGTCTGGTCCAAACATTGATTTGACTAATGCGGATTGGGATCCTCACTTCTGTTCCATGCTATGTGGAAAGAAGCTGAGATGTGGCCAGCATGTGTGCGAGACGTTATGTCATAGCGGTCACTGTCCACCGTGTCTTGAAACAATCTTCACTGATTTAACATGTGCTTGTGGTAGGACCTCAATTCCTCCTCCCCTACCTTGTGGTACAATGCCTCCCTTGTGTCAACTTCCATGTTCGGTTCCTCAGCCATGTGGCCATTCGGGCTCTCATAGTTGCCATTTCGGAGATTGCCCTCCTTGTTCGGTGCCCGTGTCAAAAGAATGTGTTGGTGGCCATGTCATTCTTAGGAACATACCATGCGGCTCAAATAATATTAGATGCAATAATCCCTGTGGAAGGACTAGACAATGTGGTTTACATGCATGTGGTAGAACATGTCATTCACCACCTTGTGATGTTCTACCTGGTTTTGTGGAAGGCTACCGAGCGCCATGTGGACAGACATGTGGTGCTCCAAGGAGTGGCTGCCGGCATATGTGTATGGCTCAATGTCACCCTACATTTTCATGCCCAGATGTAAGATGCGAGTTCCCTGTTACAATTACTTGTTCTTGTGGTCGAATAACGGCGAATGTTCCTTGTGATGTTGGTGGTAGCAGTAGTAATTATAATGCTGATGCAGTATATGAGGCTTCAATTATTCAAAAATTGCCCGTGCCGCTTCAACCGGTTGATGCAAACGGCCAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGATGAAGAATGTGCTAAGTTGGAGCGGAAAAGGGTTCTTGCTGATGCATTCGACATCACTCCAAGTCTTGATGCTCTCCATTTTGGTGAGAATTCTTCTTTCGAATTGCTTTCCGACACTTTTAGACGCGATCCAAAGTGGGTTTTGGCTGTTGAAGAAAGATGCAAAATATTAGTACTTGGAAAAAGCAAAGGAACAACACATGGTTTAAAAGTCCATGTCTTTTGTCCTATGATAAAGGATAAAAGAGATGCCGTGAGATTGATTGCTGAAAGATGGAAACTTGCGGTGAATGCTGCTGGTTGGGAGCCAAAGCGGTTTATTGTAATTTCTGCTACCCAAAAGTCTAAGGCCCCAGTTCGTGTGCTTGGGGTTAAAGACTTGCCAAGGGATGCTGATATAAGTGCCTTGGTACTTCGGTTCGGCGGTGAATGTGAGCTTGTTTGGTTGAACGACAAGAATGCTTTAGCTGTTTTTCACGATCCTGCCCGAGCTGCAACTGCGATGAGGAGGTTGGATCATGGAACAGTTTATCAGGGTGCTGTTTCGTTTGTCCAGAATGTCGGAGCATCTGCGGCGTCTTCGGTTACCAATGCTTGGGGAGGGACAAAAGAGGGAGGAGGATTGTCAACACTGAGAAGCAATCCATGGAAAAAGGCGGTGGTTCTTGACCCAGGATGGAAAGAAGAATCATGGAGTGACGAACCATGGGGTACCGGTGGTTCTGTGAATATCCAACCAGCTGTTTTGAAGAAAGAAGCGCCAATACCCGCTTCAACGAATCCGTGGAATGTTTTAAACCAGGAATCAAGTTCAAGCTCATCGTTTACAACTGTCATGAGAAGCGAAACTTCTGGAAAACAAACACAAAGCAGCGATGTCTCAACCAGAGTGCTGTCTTCTACCAGCGGAGCAATTGGAGGAAACAAGGATGCAACAGAAGCTGCTGAAGTTGTAGATGATTGGGAGCAGGCTTTTGAGTAA 3405 0.4717 MSLQMRRERREGSRFPSQRPPRQLWVPKGTGGSASTTSETTAEATATTTASITATASVAHPTGLQSREKNTNGDGGSSNQGAVSAPPLARHRSNHHGSHRVEREHVAHHVERGHVVHRVEREHVAHRVERGHVGHHVERGHVAHRSDRGSDRGRSGNMLGREYGSRDSSLPQLVQEIQEKLTRGTVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQFVQHTSSRDIKYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEKEVFGTEGRKDELCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDRLVDCGRHRCENACHVGPCDPCQVLINASCFCSKMEQVLFCGEMAMKGEFKPEGGVFSCGSNCGKELSCGNHICHEACHPGSCGECEFLPSRVKTCCCGKTQLDAERKSCVDPIPTCSQVCGKHLCCGIHNCPEPCHVGDCPPCKVQISQKCRCGSTSRTVECYKTISENQKFTCEKPCGAKKNCGRHRCNEKCCPLSGPNIDLTNADWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTMPPLCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIRCNNPCGRTRQCGLHACGRTCHSPPCDVLPGFVEGYRAPCGQTCGAPRSGCRHMCMAQCHPTFSCPDVRCEFPVTITCSCGRITANVPCDVGGSSSNYNADAVYEASIIQKLPVPLQPVDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDTFRRDPKWVLAVEERCKILVLGKSKGTTHGLKVHVFCPMIKDKRDAVRLIAERWKLAVNAAGWEPKRFIVISATQKSKAPVRVLGVKDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNVGASAASSVTNAWGGTKEGGGLSTLRSNPWKKAVVLDPGWKEESWSDEPWGTGGSVNIQPAVLKKEAPIPASTNPWNVLNQESSSSSSFTTVMRSETSGKQTQSSDVSTRVLSSTSGAIGGNKDATEAAEVVDDWEQAFE 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07456 1134 CDD NF-X1-zinc-finger 277 338 - -
Vifa1g07456 1134 CDD NF-X1-zinc-finger 564 616 - -
Vifa1g07456 1134 CDD NF-X1-zinc-finger 621 669 - -
Vifa1g07456 1134 MobiDBLite consensus disorder prediction 1067 1115 - -
Vifa1g07456 1134 MobiDBLite consensus disorder prediction 1065 1134 - -
Vifa1g07456 1134 MobiDBLite consensus disorder prediction 29 84 - -
Vifa1g07456 1134 MobiDBLite consensus disorder prediction 135 155 - -
Vifa1g07456 1134 MobiDBLite consensus disorder prediction 135 167 - -
Vifa1g07456 1134 CDD NF-X1-zinc-finger 467 515 - -
Vifa1g07456 1134 SMART znfxneu3 535 566 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 SMART znfxneu3 419 438 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 SMART znfxneu3 477 496 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 SMART znfxneu3 684 714 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 SMART znfxneu3 300 318 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 SMART znfxneu3 723 744 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 SMART znfxneu3 574 593 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 SMART znfxneu3 631 649 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 SMART znfxneu3 355 374 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 MobiDBLite consensus disorder prediction 1 107 - -
Vifa1g07456 1134 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g07456 1134 CDD NF-X1-zinc-finger 345 393 - -
Vifa1g07456 1134 CDD NF-X1-zinc-finger 409 452 - -
Vifa1g07456 1134 SUPERFAMILY RING/U-box 178 248 - -
Vifa1g07456 1134 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 54 1040 IPR034078 GO:0003700
Vifa1g07456 1134 ProSiteProfiles Zinc finger RING-type profile. 188 244 IPR001841 -
Vifa1g07456 1134 CDD RING-CH-C4HC3_NFX1-like 187 244 - -
Vifa1g07456 1134 ProSiteProfiles Zinc finger PHD-type profile. 185 246 IPR019787 -
Vifa1g07456 1134 Pfam NF-X1 type zinc finger 535 546 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 Pfam NF-X1 type zinc finger 302 317 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 Pfam NF-X1 type zinc finger 684 699 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 Pfam NF-X1 type zinc finger 355 373 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 Pfam NF-X1 type zinc finger 574 591 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 Pfam NF-X1 type zinc finger 631 648 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 Pfam NF-X1 type zinc finger 419 436 IPR000967 GO:0005634|GO:0008270
Vifa1g07456 1134 Pfam NF-X1 type zinc finger 477 495 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07456 Vifa-Chr1 1154022269 1154025757 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vifa1g07456 zf-NF-X1 0.056 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07456 K12236 - gmx:100789059 1608.19