Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g07456 | ATGAGCTTGCAAATGAGACGAGAAAGAAGGGAAGGGTCGAGGTTCCCTTCACAACGCCCTCCTCGGCAATTATGGGTTCCGAAAGGAACGGGAGGTTCAGCTTCAACAACCTCTGAAACCACCGCGGAAGCCACTGCCACCACCACTGCCTCAATCACTGCCACTGCAAGCGTTGCTCATCCTACAGGTTTGCAGTCTCGTGAGAAGAACACTAATGGTGATGGTGGTTCGTCCAATCAAGGGGCTGTTAGTGCTCCACCGTTGGCTAGGCATAGAAGTAACCATCATGGTTCTCATAGGGTGGAAAGGGAACATGTTGCTCATCATGTTGAAAGGGGACATGTTGTGCATCGTGTGGAAAGGGAACATGTTGCTCATCGCGTGGAGAGGGGACATGTTGGTCATCATGTGGAAAGGGGACATGTTGCACATAGGAGTGACAGGGGAAGTGATAGAGGGAGGAGTGGGAATATGTTGGGGAGGGAATACGGATCGAGGGACTCTAGTTTGCCCCAATTGGTGCAGGAGATTCAAGAGAAGCTCACGAGAGGTACTGTGGAGTGTATGATTTGCTATGATATGGTTCGTAGGTCTGCACCTGTTTGGTCTTGCTCCAGCTGCTACTCTATCTTTCACCTGAACTGTATCAAGAAGTGGGCTCGTGCGCCCACCTCGGTTGATTTATCAGCAGAGAAGAATCTAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTTTGTGCAACATACGTCTTCAAGGGATATAAAATATGTATGCTTTTGCGGAAAGAGAGTAGACCCTCCATCTGATTTGTATTTGACCCCTCATTCGTGTGGTGAACCGTGTGGAAAGCCTCTTGAGAAGGAGGTGTTTGGTACGGAGGGGAGAAAAGATGAGCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCGGGTCCGTGTCCTCCGTGTAAAGCATTTGCCCCTCCTCGTTTGTGCCCTTGTGGGAAGAAACGAATCGCCACTCGTTGCTCTGATCGGCAGTCTGATCTTACTTGCGGTCAGCGCTGTGATAGGCTTGTTGATTGTGGACGTCATCGCTGCGAAAATGCTTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTCATCAATGCATCTTGTTTTTGCAGTAAAATGGAGCAGGTACTTTTTTGTGGGGAGATGGCTATGAAAGGTGAATTTAAACCCGAAGGTGGAGTTTTTTCTTGTGGTTCCAATTGTGGAAAGGAACTTAGTTGTGGTAATCATATCTGCCATGAAGCTTGTCATCCAGGCAGCTGTGGCGAATGCGAATTTTTACCAAGCCGGGTTAAGACATGCTGTTGTGGAAAAACACAGCTGGATGCAGAACGGAAGAGTTGTGTGGATCCAATACCTACCTGCTCACAAGTATGTGGCAAGCACCTTTGTTGTGGGATACATAATTGTCCGGAGCCATGCCATGTTGGGGACTGTCCGCCATGTAAGGTCCAAATTTCACAGAAATGCCGCTGTGGCTCAACTTCCCGAACTGTGGAATGCTATAAAACAATATCAGAGAATCAGAAATTTACTTGTGAAAAGCCGTGTGGGGCAAAGAAAAATTGTGGACGGCACCGATGCAACGAAAAGTGTTGTCCATTGTCTGGTCCAAACATTGATTTGACTAATGCGGATTGGGATCCTCACTTCTGTTCCATGCTATGTGGAAAGAAGCTGAGATGTGGCCAGCATGTGTGCGAGACGTTATGTCATAGCGGTCACTGTCCACCGTGTCTTGAAACAATCTTCACTGATTTAACATGTGCTTGTGGTAGGACCTCAATTCCTCCTCCCCTACCTTGTGGTACAATGCCTCCCTTGTGTCAACTTCCATGTTCGGTTCCTCAGCCATGTGGCCATTCGGGCTCTCATAGTTGCCATTTCGGAGATTGCCCTCCTTGTTCGGTGCCCGTGTCAAAAGAATGTGTTGGTGGCCATGTCATTCTTAGGAACATACCATGCGGCTCAAATAATATTAGATGCAATAATCCCTGTGGAAGGACTAGACAATGTGGTTTACATGCATGTGGTAGAACATGTCATTCACCACCTTGTGATGTTCTACCTGGTTTTGTGGAAGGCTACCGAGCGCCATGTGGACAGACATGTGGTGCTCCAAGGAGTGGCTGCCGGCATATGTGTATGGCTCAATGTCACCCTACATTTTCATGCCCAGATGTAAGATGCGAGTTCCCTGTTACAATTACTTGTTCTTGTGGTCGAATAACGGCGAATGTTCCTTGTGATGTTGGTGGTAGCAGTAGTAATTATAATGCTGATGCAGTATATGAGGCTTCAATTATTCAAAAATTGCCCGTGCCGCTTCAACCGGTTGATGCAAACGGCCAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGATGAAGAATGTGCTAAGTTGGAGCGGAAAAGGGTTCTTGCTGATGCATTCGACATCACTCCAAGTCTTGATGCTCTCCATTTTGGTGAGAATTCTTCTTTCGAATTGCTTTCCGACACTTTTAGACGCGATCCAAAGTGGGTTTTGGCTGTTGAAGAAAGATGCAAAATATTAGTACTTGGAAAAAGCAAAGGAACAACACATGGTTTAAAAGTCCATGTCTTTTGTCCTATGATAAAGGATAAAAGAGATGCCGTGAGATTGATTGCTGAAAGATGGAAACTTGCGGTGAATGCTGCTGGTTGGGAGCCAAAGCGGTTTATTGTAATTTCTGCTACCCAAAAGTCTAAGGCCCCAGTTCGTGTGCTTGGGGTTAAAGACTTGCCAAGGGATGCTGATATAAGTGCCTTGGTACTTCGGTTCGGCGGTGAATGTGAGCTTGTTTGGTTGAACGACAAGAATGCTTTAGCTGTTTTTCACGATCCTGCCCGAGCTGCAACTGCGATGAGGAGGTTGGATCATGGAACAGTTTATCAGGGTGCTGTTTCGTTTGTCCAGAATGTCGGAGCATCTGCGGCGTCTTCGGTTACCAATGCTTGGGGAGGGACAAAAGAGGGAGGAGGATTGTCAACACTGAGAAGCAATCCATGGAAAAAGGCGGTGGTTCTTGACCCAGGATGGAAAGAAGAATCATGGAGTGACGAACCATGGGGTACCGGTGGTTCTGTGAATATCCAACCAGCTGTTTTGAAGAAAGAAGCGCCAATACCCGCTTCAACGAATCCGTGGAATGTTTTAAACCAGGAATCAAGTTCAAGCTCATCGTTTACAACTGTCATGAGAAGCGAAACTTCTGGAAAACAAACACAAAGCAGCGATGTCTCAACCAGAGTGCTGTCTTCTACCAGCGGAGCAATTGGAGGAAACAAGGATGCAACAGAAGCTGCTGAAGTTGTAGATGATTGGGAGCAGGCTTTTGAGTAA | 3405 | 0.4717 | MSLQMRRERREGSRFPSQRPPRQLWVPKGTGGSASTTSETTAEATATTTASITATASVAHPTGLQSREKNTNGDGGSSNQGAVSAPPLARHRSNHHGSHRVEREHVAHHVERGHVVHRVEREHVAHRVERGHVGHHVERGHVAHRSDRGSDRGRSGNMLGREYGSRDSSLPQLVQEIQEKLTRGTVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQFVQHTSSRDIKYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEKEVFGTEGRKDELCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDRLVDCGRHRCENACHVGPCDPCQVLINASCFCSKMEQVLFCGEMAMKGEFKPEGGVFSCGSNCGKELSCGNHICHEACHPGSCGECEFLPSRVKTCCCGKTQLDAERKSCVDPIPTCSQVCGKHLCCGIHNCPEPCHVGDCPPCKVQISQKCRCGSTSRTVECYKTISENQKFTCEKPCGAKKNCGRHRCNEKCCPLSGPNIDLTNADWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTMPPLCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIRCNNPCGRTRQCGLHACGRTCHSPPCDVLPGFVEGYRAPCGQTCGAPRSGCRHMCMAQCHPTFSCPDVRCEFPVTITCSCGRITANVPCDVGGSSSNYNADAVYEASIIQKLPVPLQPVDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDTFRRDPKWVLAVEERCKILVLGKSKGTTHGLKVHVFCPMIKDKRDAVRLIAERWKLAVNAAGWEPKRFIVISATQKSKAPVRVLGVKDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNVGASAASSVTNAWGGTKEGGGLSTLRSNPWKKAVVLDPGWKEESWSDEPWGTGGSVNIQPAVLKKEAPIPASTNPWNVLNQESSSSSSFTTVMRSETSGKQTQSSDVSTRVLSSTSGAIGGNKDATEAAEVVDDWEQAFE | 1134 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g07456 | 1134 | CDD | NF-X1-zinc-finger | 277 | 338 | - | - | |
Vifa1g07456 | 1134 | CDD | NF-X1-zinc-finger | 564 | 616 | - | - | |
Vifa1g07456 | 1134 | CDD | NF-X1-zinc-finger | 621 | 669 | - | - | |
Vifa1g07456 | 1134 | MobiDBLite | consensus disorder prediction | 1067 | 1115 | - | - | |
Vifa1g07456 | 1134 | MobiDBLite | consensus disorder prediction | 1065 | 1134 | - | - | |
Vifa1g07456 | 1134 | MobiDBLite | consensus disorder prediction | 29 | 84 | - | - | |
Vifa1g07456 | 1134 | MobiDBLite | consensus disorder prediction | 135 | 155 | - | - | |
Vifa1g07456 | 1134 | MobiDBLite | consensus disorder prediction | 135 | 167 | - | - | |
Vifa1g07456 | 1134 | CDD | NF-X1-zinc-finger | 467 | 515 | - | - | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 535 | 566 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 419 | 438 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 477 | 496 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 684 | 714 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 300 | 318 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 723 | 744 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 574 | 593 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 631 | 649 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | SMART | znfxneu3 | 355 | 374 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
Vifa1g07456 | 1134 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Vifa1g07456 | 1134 | CDD | NF-X1-zinc-finger | 345 | 393 | - | - | |
Vifa1g07456 | 1134 | CDD | NF-X1-zinc-finger | 409 | 452 | - | - | |
Vifa1g07456 | 1134 | SUPERFAMILY | RING/U-box | 178 | 248 | - | - | |
Vifa1g07456 | 1134 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 | 54 | 1040 | IPR034078 | GO:0003700 | |
Vifa1g07456 | 1134 | ProSiteProfiles | Zinc finger RING-type profile. | 188 | 244 | IPR001841 | - | |
Vifa1g07456 | 1134 | CDD | RING-CH-C4HC3_NFX1-like | 187 | 244 | - | - | |
Vifa1g07456 | 1134 | ProSiteProfiles | Zinc finger PHD-type profile. | 185 | 246 | IPR019787 | - | |
Vifa1g07456 | 1134 | Pfam | NF-X1 type zinc finger | 535 | 546 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | Pfam | NF-X1 type zinc finger | 302 | 317 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | Pfam | NF-X1 type zinc finger | 684 | 699 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | Pfam | NF-X1 type zinc finger | 355 | 373 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | Pfam | NF-X1 type zinc finger | 574 | 591 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | Pfam | NF-X1 type zinc finger | 631 | 648 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | Pfam | NF-X1 type zinc finger | 419 | 436 | IPR000967 | GO:0005634|GO:0008270 | |
Vifa1g07456 | 1134 | Pfam | NF-X1 type zinc finger | 477 | 495 | IPR000967 | GO:0005634|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g07456 | Vifa-Chr1 | 1154022269 | 1154025757 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-X1 | Vifa1g07456 | zf-NF-X1 | 0.056 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g07456 | K12236 | - | gmx:100789059 | 1608.19 |