Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07446 ATGCCTATGTATCAGCCTTCTATGGTTGTGGGTTTTGAGGGTGGTGGTGATGGTCAGATTCTAGATCTGGACACTGCTGTGAAAGATGGTGTTTTGGGTGGTGGTGGTGGTGGTGGTGGGGTTGTGGGAAGTGGCGGTGTTGGTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGAGTTATGTGAAGTTCCAAGTGTTTTCATTTGTCCAATTTCTCTTGAGCCAATGCAAGACCCTGTTACTCTTTGCACTGGACAAACCTACGAGAGGAACAACATTCTTAAATGGTTTAACCTAGGACACTTGACTTGTCCCACTACTATGCAAGAGCTTTGGGATGATTCCATCACTCCAAACACGACTCTCTACAGACTCATCTTCACTTGGTTCTCTCAGAAGTATTTGTTGATGAAGAAGAGGTCTGAGGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGAGACACTCAAGAAGGTGAAGGGTCAAGCTCGTGTTCATGCTTTGAAGGAGCTTCATCAGGTTGTGGCTTTTCATGCTACTGCTCGTAAGTCTGTGATTGACGAAGGTGGTGTTTCTGTTTTGTGTTCTTTACTTGGTCCTTTTACTTCATATGCTGTTGGTTCAGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCCAAGAAGAATCTTATGCAACCTGCTAAGATTTCGTTGATGGTTGATATCTTGAATGAGGGTTCAATTGAGACCAAAATCAATTGCACGCGGTTGATCGAGTCATTGATTGAGGAGAAAGATTTCCGGTCCGAGATTATCTCCAGCCATAGTCTATTGATTGGTTTGATGAGGCTTGTTAAGGATAAGAGACATAGCAATGGAATCTGTCCTGGATTAAGCCTCCTCAAAACAGTGTGCTTCTATAAAGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCTCAATTAGTCGAATTGTTATCTGGTATGGACCATGATTGTTTGGAATTAGCTCTTTGTGTTTTGGATTCATTGTCGTCTATACCCGAAGGAAGAGTCGCTTTGAGGGATTGTGTTAACACGATACCCATCATGGTGAGATTTTTGATGAGGATCTCAGAAACCTGCACTCAGTACGCATTGTCAATTTTGTGGTCTGTTTGCAAGCTTGCGCCCGAGGAATGTTCTGCAATTGCCATCGATGCAGGGCTTGCTGCAAAACTTCTACTAGTGATTCAAAGTGGTTGCAATCCAATATTAAAACAACAATCCGCCGAGCTTTTGAAACTGTGTAGTTTGAATTATTCAGATACTATCTTCATTTCGAAGTGCAAGCTTACAAGAACCATCCAATGA 1353 0.4176 MPMYQPSMVVGFEGGGDGQILDLDTAVKDGVLGGGGGGGGVVGSGGVGGEKLDLRKMIQELELCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIFTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHQVVAFHATARKSVIDEGGVSVLCSLLGPFTSYAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLIGLMRLVKDKRHSNGICPGLSLLKTVCFYKEVKILLVSIGAVSQLVELLSGMDHDCLELALCVLDSLSSIPEGRVALRDCVNTIPIMVRFLMRISETCTQYALSILWSVCKLAPEECSAIAIDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07446 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Vifa1g07446 450 SUPERFAMILY RING/U-box 61 136 - -
Vifa1g07446 450 Gene3D - 139 443 IPR011989 -
Vifa1g07446 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Vifa1g07446 450 SUPERFAMILY ARM repeat 154 435 IPR016024 -
Vifa1g07446 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Vifa1g07446 450 PANTHER WDSAM1 PROTEIN 59 436 IPR045185 GO:0061630
Vifa1g07446 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Vifa1g07446 450 CDD RING-Ubox_PUB 67 117 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07446 Vifa-Chr1 1152135664 1152137016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07446 1 450 U-box Gene Family AT3G49810 72.848 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07446 - - gmx:100779827 761.525