LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g07439	ATGATTATGAACTTCGATCGTTTTTCGGGACTACCTGATAACGGAACATTCACTATCGGCTTCACTCCATCAGACATTGATAATCGATTATTCACGTTAGGCATTTGGTTTGCTAGCCTTCCAGGAGATCGAACTTTCGTTTGGTCACCCAATAGAAACTCACCTACATCTCAAGAAGAAATTTTGGAGCTTGACACAACAGGAAACCTCGTCCTCGTCGACAAAAAAGTCACCATATGGGCCTCAAACACATCAAATGCTAATGTAGAATCAGCAACCATGTCAGAATCTGGTAACTTCATCCTTCACAGCACAAACAACCACCCTATATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCCTCATCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAAGCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGAGAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAACTAGGAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACCAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTGCAGATCAGCACAAGTAACTTTTCGCAGCTTCTAGGAACAGTTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCTGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACCAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAACAAGATAATACATTGTGACATCAAGCTAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTGAGAGGCACTAGAGGCTATTTGGCACCAGAATGGGTTAGTAATCGACCGATAACCGTAAAAGCAGATGTTTACAGCTATGGAATGCTTCTTTTCTTATTTTTTTGGTGTTTTGTTTAG	2112	0.3849	MIMNFDRFSGLPDNGTFTIGFTPSDIDNRLFTLGIWFASLPGDRTFVWSPNRNSPTSQEEILELDTTGNLVLVDKKVTIWASNTSNANVESATMSESGNFILHSTNNHPIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKLGRDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQISTSNFSQLLGTVGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGPDRLLDWQTRFDIAKNTAQGIAYFHEQCRNKIIHCDIKLENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLFLFFWCFV	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g07439	703	ProSiteProfiles	Bulb-type lectin domain profile.	1	115	IPR001480	-
	Vifa1g07439	703	FunFam	serine/threonine-protein kinase PBS1-like	470	577	-	-
	Vifa1g07439	703	Gene3D	-	11	117	IPR036426	-
	Vifa1g07439	703	SMART	serkin_6	502	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g07439	703	CDD	B_lectin	11	117	IPR001480	-
	Vifa1g07439	703	SMART	blect_4	4	117	IPR001480	-
	Vifa1g07439	703	Pfam	S-locus glycoprotein domain	225	305	IPR000858	GO:0048544
	Vifa1g07439	703	Pfam	D-mannose binding lectin	45	132	IPR001480	-
	Vifa1g07439	703	PANTHER	OS07G0415500 PROTEIN	14	695	-	-
	Vifa1g07439	703	Gene3D	Transferase(Phosphotransferase) domain 1	578	701	-	-
	Vifa1g07439	703	SUPERFAMILY	Protein kinase-like (PK-like)	482	699	IPR011009	-
	Vifa1g07439	703	PIRSF	SRK	8	697	IPR024171	GO:0004674
	Vifa1g07439	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	625	637	IPR008271	GO:0004672\|GO:0006468
	Vifa1g07439	703	Gene3D	Phosphorylase Kinase; domain 1	466	577	-	-
	Vifa1g07439	703	SUPERFAMILY	alpha-D-mannose-specific plant lectins	45	119	IPR036426	-
	Vifa1g07439	703	FunFam	Protein kinase superfamily protein	578	653	-	-
	Vifa1g07439	703	ProSiteProfiles	Protein kinase domain profile.	502	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g07439	703	Pfam	Protein kinase domain	505	696	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g07439	Vifa-Chr1	1150648105	1150650535	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g07439	448	696	Receptor kinase-like Gene Family	AT5G20050	43.609	2.32e-60	208

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Vifa1g07439		Pkinase	1.9e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g07439	-		-	tpra:123904109	1252.27