Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07429 ATGGATACGTTGTTTAGACTTGTCAGTTTTCAACACCAACACCAACCTCATCAATCTCTCAACTCCACTACAACAACAACATCTAGTAGCTCTCGATCCTCCAAACAAAACTATCACCAATATTACCCTCAACAACAAGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTTTCCTCATCTTCTTCCAAACACTACTATCCTTATAACCAACCACAAACTTCAATCACTACTAAAACCTCCACACCCCCACCACCACCTCCAATTGATCATTTCAACTTTGAATTAACCGGAAAGTGGGCCCACAACATCCTCCTCGAAACCGCACGTGCCATAGCAGAAAAAAATAGCAATCGTTTACAACAACTCATGTGGATGCTTAACGAACTAAGCTCCCCTTACGGCGACACGGAACAAAAACTAGCTGCTTATTTTCTCCAAGCTTTATTCTCTCGTATGACCGAAGCTGGGGTCCGAACCTTCAGAACCCTAGCTTCGGCTTCCGAGAAAACTTGCTCGTTCGAATCAACACGAAAAACGGTTTTGAAATTTCAAGAAGTTAGTCCATGGACAACTTTCGGCCATGTAGCTTGTAATGGCGCAATCTTAGAAGCATTAGAAGGAGATTCAAAGTTGCATATAATTGATATTAGTAACACATATTGCACTCAATGGCCTACGCTTTTTGAAGCGTTGGCGACTCGAACCGATGACACTCCACACCTCCGTTTAACCACGGTTTTAACTGCTAGTGGTTCTGTTCAAAAAGTCATGAAGGAAATTGGTGCAAGATTAGAGAAATTCGCTAGACTTATGGGGGTTCCATTTAAATTCAACGTTATTCATCACGGTGGCGATCTTTCCGATTTGGATTTTTCCGGTTTGGATATTAAGGAGGATGAAGCGTTGGCGGTTAATTGTGTTAATACTTTGCATTCGATAAGCGTTGGTAATAGTAACGGTAGCGGTAACCGTAACCGTAACCGTCGAGACGCGTTGATAGGTTCGTTGATGAGGTTGCGTCCGAGGCTAGTTACGGTGGTGGAAGAAGAAGCTGATTTGGATTTTGGTTTCGAAGGATTTGAATTCGTGAGAGGTTTTGAAGAGTGTTTGCGGTGGTTTAGGGTTTATTTCGATGCATTGGAAGAGAGTTTTCCGAAGACGAGTAACGAGCGTTTGATGCTGGAAAGGGAGGCGGGGAGAGGGATAGTTGATTTGGTGGCGTGTGCTCCGGCGGAGTCGATGGAACGGAGGGAGACGGCGGTGAGGTGGTCGCAGCGTTTGCATGGCGGAGGGTTTAATACGGTGCCGTTTAGTGATGAAGTTAGCGATGATGTGAGAGCGTTGTTGAGAAGGTATAAGGAAGGGTGGTCGATGACGCCGTGTAGCGACGCCGGAATATTCTTGACGTGGAGGGAACACCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 1461 0.4538 MDTLFRLVSFQHQHQPHQSLNSTTTTTSSSSRSSKQNYHQYYPQQQEEECFNFFMDEEDLSSSSSKHYYPYNQPQTSITTKTSTPPPPPPIDHFNFELTGKWAHNILLETARAIAEKNSNRLQQLMWMLNELSSPYGDTEQKLAAYFLQALFSRMTEAGVRTFRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEALEGDSKLHIIDISNTYCTQWPTLFEALATRTDDTPHLRLTTVLTASGSVQKVMKEIGARLEKFARLMGVPFKFNVIHHGGDLSDLDFSGLDIKEDEALAVNCVNTLHSISVGNSNGSGNRNRNRRDALIGSLMRLRPRLVTVVEEEADLDFGFEGFEFVRGFEECLRWFRVYFDALEESFPKTSNERLMLEREAGRGIVDLVACAPAESMERRETAVRWSQRLHGGGFNTVPFSDEVSDDVRALLRRYKEGWSMTPCSDAGIFLTWREHPVVWASAWRP 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07429 486 MobiDBLite consensus disorder prediction 12 40 - -
Vifa1g07429 486 ProSiteProfiles GRAS family profile. 94 485 IPR005202 -
Vifa1g07429 486 Pfam GRAS domain family 105 485 IPR005202 -
Vifa1g07429 486 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 73 474 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07429 Vifa-Chr1 1147457892 1147459352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07429 1 486 GRAS Transcription Factor Family AT4G37650 58.195 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g07429 GRAS 1.6e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07429 - - gmx:100820459 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07429 1 1147457892 1147459352 Vifa1g07429 1 1147457892 1147459352 ECH
Vifa1g07429 1 1147457892 1147459352 Vifa4g02727 4 848031637 848033229 PCT