Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07428 ATGGGGAAGAAACAGCACAGCAAAGACCGAATGTTCATAACCAAAACTGAGTGGGCAACGGAATGGGGAGGTTTTAAATCCAAAGAAAATCGCACCGCTTTCAAACGTCTCCCTTTTTACTGCTGCGCACTTACTTTTACTCCGTTTGAGTTTCCAGTTTGTACACCTGATGGAAGCGTTTTCGATGTTATGCACATAACTCCATATATTGTAAAATACGGTAAACATCCTGTTACTGGTGCTCCATTGAAGCAGCAAGATCTCATTCCACTAACTTTTCACAAGAACTCAGAAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACCGAGTTTACACACATTGTTGCAGTCAAGACTACTGGAAATGTCTTTTGCTATGAGGCCGTTAAGGAGTTAAACATCAAAACAAAAAACTGGAAGGAGCTACTCACCGATGAGACATTCACTAGGGATGACCTTATAACTATTCAGAATCCTAATGCACTTGACCAGAAGGTTCTTCTGGATTTTGATCATGTTAAACAAAATTTGAAAATTGATGATGAAGAATTACAGAAAATGAGTTCAGACCCAACCTATAACATAAACATGTCGGGTGATATCAAGCAAATGCTTAAGGAGCTTGGAACTGAGGAAGGAAAGGAAACTGCATTGCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCCGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCGCAAGTTAAAGAAGATTCCAAATCGAATCCTGATGCAGCTCCTCCGGCACTCAGTATTGTAGATGCTGCATCTGCCTCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCAGAATAGCTATGCACGTGGCTGGAGACAGGGCGCCTGTGAATGCAAAGCTGGTTAAAAGTCGTTACACTACTGGTGCTGCTTCCCGATCTTTCACTTCAACATCATATGATCCAGTTACAGAAAATGGTTATGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAACTGCATACAACACATGGTGATTTGAACATCGAGCTTCATTGTGATATAGCTCCCAGGGCATGTGAGAACTTTATCACACTTTGTGAGCGTGGATATTATAACGGAGTTGCTTTTCATAGAAGCATTAGGAATTTTATGATACAAGGTGGTGATCCTACTGGTACTGGTAGAGGTGGTGAATCAATTTGGGGAAAACCCTTTAAGGATGAACTCAACTCCAAATTAGTCCACTCCGGAAGGGGTGTGGTTAGCATGGCAAACAGTGGCCCACATACTAATGGTTCCCAGTTTTTCATCCTGTACAAGTCTGCAAATCATTTAAACTTCAAACATACAGTTTTCGGAGGAGTAGTCGGTGGCTTGACTACACTAGCAGCAATGGAAAAGGTTCCAGTTGATGACGGTGACCGACCTCTGGACGAAATCAAGATAACAGGTGTCACAACTTTTGTCAATCCTTACACCGAACCAGATGAGGAAGAAGAGCAAGCAAATGCCAAAGAGAAGAATGCAAATGATGAAGAAAATGACAAAGTTGGCTCATGGTATAGTAATCCTGGAGCTGGAACATCTGAGTCTGGAGCTACGGGGGTTGGCAGTGGTGGTGTTGGTAAGTACTTGAAGGCTAAGAGTGTTCCAACCGAAGCTGCAGCTGCTGCCGCTGACACAGGTACAGCCGTTGTAGGAAAGAAAAGAAAAGCAGTTGTCAGTGGTGGATTCAAAGACTTTTCTGCATGGTAA 1788 0.4301 MGKKQHSKDRMFITKTEWATEWGGFKSKENRTAFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMHITPYIVKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDETFTRDDLITIQNPNALDQKVLLDFDHVKQNLKIDDEELQKMSSDPTYNINMSGDIKQMLKELGTEEGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSNPDAAPPALSIVDAASASVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKLVKSRYTTGAASRSFTSTSYDPVTENGYEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDGDRPLDEIKITGVTTFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESGATGVGSGGVGKYLKAKSVPTEAAAAAADTGTAVVGKKRKAVVSGGFKDFSAW 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07428 595 MobiDBLite consensus disorder prediction 503 546 - -
Vifa1g07428 595 MobiDBLite consensus disorder prediction 526 546 - -
Vifa1g07428 595 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 382 399 IPR020892 GO:0003755|GO:0006457
Vifa1g07428 595 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Vifa1g07428 595 Gene3D - 329 512 IPR029000 -
Vifa1g07428 595 SUPERFAMILY Cyclophilin-like 347 507 IPR029000 -
Vifa1g07428 595 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Vifa1g07428 595 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 347 497 IPR002130 GO:0000413|GO:0003755
Vifa1g07428 595 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 351 498 IPR002130 GO:0000413|GO:0003755
Vifa1g07428 595 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Vifa1g07428 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Vifa1g07428 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 387 399 IPR002130 GO:0000413|GO:0003755
Vifa1g07428 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 445 457 IPR002130 GO:0000413|GO:0003755
Vifa1g07428 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 458 473 IPR002130 GO:0000413|GO:0003755
Vifa1g07428 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 361 376 IPR002130 GO:0000413|GO:0003755
Vifa1g07428 595 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 430 445 IPR002130 GO:0000413|GO:0003755
Vifa1g07428 595 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
Vifa1g07428 595 SUPERFAMILY RING/U-box 38 105 - -
Vifa1g07428 595 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 341 512 IPR044666 -
Vifa1g07428 595 CDD cyclophilin_RING 347 505 - -
Vifa1g07428 595 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 328 512 - -
Vifa1g07428 595 MobiDBLite consensus disorder prediction 509 525 - -
Vifa1g07428 595 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07428 Vifa-Chr1 1147092929 1147099732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07428 1 595 U-box Gene Family AT5G67530 75.833 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07428 K10598 - gmx:100819923 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07428 1 1147092929 1147099732 Vifa1g07428 1 1147092929 1147099732 ECH