Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07417 ATGTTGCCACCCCCATTTTCTTTGTCTAGTCTTCTCTGTCATGAACAAACCGATTCAACATTCTTTTTCAAAGAAGATGATGAACATGAAAATACCATCTTCGTTAACTCATCACATAATTATCTCGAAGATGTAGAGGAAGACGAATATATTGAATATCTATTCAAACAAGAATCAGGATTTGAATCCTCCACCACTCATTTCTTATCCTACGACGACCATGCTGATGTTGATGATGATATATTCTGGTTGAGAAATGCTCGTTTGCATGCCATTGATTGGATTTTCAGTACACAAGCAAAATTTGGATTCACACTTCAAACAGCTTATTTATCAATCACTTATTTCGACCGTTTTCTCTCAAAACGATCCATTGATGAATCAAAACCATGGGCTACTCAATTATTATCAGTGGCATGTTTATCAATAGCAGCAAAAATGGAAGAACAAAGAGTTCCTACATTATCAGAATATCCAATAGAGTTTCGATTTGAGAACAAAGTTATCAAGAACATGGAGATTTTGATTTTGACTACTTTGGAATGGAAAATGGGATTACCAACACCTTTTGCTTTTTTACATTATTTCTTCACCAAGTTCTGCAATCAATATTCAAGACCAGAAACAATAATCTCAAAAGCCACACAACACATTGTAACATTGGTCAAAGATTTTAATTTGATGAATCAACGACCATCTATAATTGCTTCTGCTTCTATATTAGCGGCTTTTGATTCCACATTAACTGAGAAGGAAATTGATATTCAGATAAAGCTAGTCTCGTCATGGGGAAATATAGAAAGTGAACAAGTATTTTCATGTTACAATGTTATACAAGAAAAGAAGAGAGACAAAGTTAAGAAGACACCTTCCTCGGATTTATTATCAAAAGAGTCGAATTTGACTTATGTTGTTGAGAACAAATCTAGTGGTTTTTCAGGAGTTAAGAGAAAGCTTGGTTATGAGAATATTGAAGATTTTCAAGAACAAAAGCTACAACGACCTTAG 1008 0.3383 MLPPPFSLSSLLCHEQTDSTFFFKEDDEHENTIFVNSSHNYLEDVEEDEYIEYLFKQESGFESSTTHFLSYDDHADVDDDIFWLRNARLHAIDWIFSTQAKFGFTLQTAYLSITYFDRFLSKRSIDESKPWATQLLSVACLSIAAKMEEQRVPTLSEYPIEFRFENKVIKNMEILILTTLEWKMGLPTPFAFLHYFFTKFCNQYSRPETIISKATQHIVTLVKDFNLMNQRPSIIASASILAAFDSTLTEKEIDIQIKLVSSWGNIESEQVFSCYNVIQEKKRDKVKKTPSSDLLSKESNLTYVVENKSSGFSGVKRKLGYENIEDFQEQKLQRP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07417 335 SMART cyclin_7 93 178 IPR013763 -
Vifa1g07417 335 PANTHER CYCLINS 41 286 IPR039361 -
Vifa1g07417 335 SMART Cyclin_C_2 187 304 IPR004367 -
Vifa1g07417 335 Gene3D - 86 185 - -
Vifa1g07417 335 FunFam Cyclin-D5-1 83 185 - -
Vifa1g07417 335 Pfam Cyclin, C-terminal domain 187 282 IPR004367 -
Vifa1g07417 335 CDD CYCLIN_AtCycD-like_rpt2 188 278 - -
Vifa1g07417 335 ProSitePatterns Cyclins signature. 88 119 IPR006671 -
Vifa1g07417 335 Gene3D - 186 276 - -
Vifa1g07417 335 Pfam Cyclin, N-terminal domain 67 184 IPR006671 -
Vifa1g07417 335 SUPERFAMILY Cyclin-like 44 184 IPR036915 -
Vifa1g07417 335 CDD CYCLIN_AtCycD-like_rpt1 87 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07417 Vifa-Chr1 1143872476 1143873866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07417 1 268 Core Cell Cycle Gene Families AT4G37630 34.643 1.43e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07417 K18811 - gmx:100798140 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07417 1 1143872476 1143873866 Vifa1g07417 1 1143872476 1143873866 ECH