Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07416 ATGGCTAACATGGATGGCAAATCACTCCTGAGTAGGAAGAAATCCATTCCCATACCACCTCCTCCGCCTCAATCAGCAGCAACAGGTTATCCTTGCGAGTATGTGGTGATGAATAATTTAGCACCGAGAGGGCGAAGCAGCTGTGTCCCTACTGCAACAAGAGATTTGTGGGAGCGTCTTTTCAATGAAGGTTATAAAGCCGATGTTCGCATTAATACTGATAACGGTGGCATTGTTTATGCTCATTCTAACATTATTGCGGTGGCTTCTCCTGTATTGGGAGGTATGCTGAAGCAAGCAAATCGTTCCAATCGATGGCGATCAATCTCAACCTTTGGGGTTCCACATGATGCAGTACGAGTTTTTATTCGATTCTTGTACTCTTCCTGTTACGAGAACGAAGAAATGAAGGAATTTGTCCTACATTTGTTGGTGCTGTCACATGTATACGCAGTCCCTCACTTGAAGCGTGAATGTGAACTGAAGCTAGAATTGGGCTTACTCACCATAGATAATGTAGTGGATGTATTTCAACTTGCATTACTGTGTGATGCACCACGGCTCAGTCTCATTTGTCATCGTAAAATACTAAAAAACTTCAAAACTGTTTCGGAGTCAGAAGGATGGAAAGCAATGAAGCAGAGCCACCCGATTCTAGAAAAGGAACTTCTGGAATCAATGATCGAAGAAGAAAATAGTAAGAAGGAGAGGATCCGAAAAATGAATGAAAAAGAGGTCTATCTACAATTATACGATGCAATGGAAGCTCTTGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGCCCTCATGATAAAGACTTCAAAGCAAACCAACAACCGTGTAGGTATACATCTTGCAAAGGGCTAGAACTTCTTGTTCGCCATTTTGCTGGTTGCAAGTTGAGAGCCCCAGGAGGTTGTGCCCATTGCAAAAGGATGTGGCAACTCTTGGAGCTGCATTCTCGACTATGTGCTGATCCAAATTCATGTAGAGTACCTCTGTGCAGGAACTTTAGGCAGAGACTAGCAAAACAAAGCAAGAAAGACGAAATTAGATGGACAATATTGGTTGAAAAGATCTTGAAAACAAGAGGAATCGGGATTGCACCATGCTTTCGGCCACTGTGA 1131 0.4271 MANMDGKSLLSRKKSIPIPPPPPQSAATGYPCEYVVMNNLAPRGRSSCVPTATRDLWERLFNEGYKADVRINTDNGGIVYAHSNIIAVASPVLGGMLKQANRSNRWRSISTFGVPHDAVRVFIRFLYSSCYENEEMKEFVLHLLVLSHVYAVPHLKRECELKLELGLLTIDNVVDVFQLALLCDAPRLSLICHRKILKNFKTVSESEGWKAMKQSHPILEKELLESMIEEENSKKERIRKMNEKEVYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQQPCRYTSCKGLELLVRHFAGCKLRAPGGCAHCKRMWQLLELHSRLCADPNSCRVPLCRNFRQRLAKQSKKDEIRWTILVEKILKTRGIGIAPCFRPL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07416 376 FunFam BTB/POZ and TAZ domain-containing protein 2 169 239 - -
Vifa1g07416 376 Pfam BTB/POZ domain 59 163 IPR000210 GO:0005515
Vifa1g07416 376 SMART TAZ_2 244 337 IPR000197 -
Vifa1g07416 376 Pfam TAZ zinc finger 252 336 IPR000197 -
Vifa1g07416 376 Gene3D TAZ domain 242 364 IPR035898 -
Vifa1g07416 376 ProSiteProfiles BTB domain profile. 67 135 IPR000210 GO:0005515
Vifa1g07416 376 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g07416 376 SUPERFAMILY POZ domain 47 163 IPR011333 -
Vifa1g07416 376 CDD BACK 169 229 - -
Vifa1g07416 376 SUPERFAMILY TAZ domain 244 344 IPR035898 -
Vifa1g07416 376 FunFam BTB/POZ and TAZ domain-containing protein 2 241 366 - -
Vifa1g07416 376 Gene3D Potassium Channel Kv1.1; Chain A 49 165 IPR011333 -
Vifa1g07416 376 Coils Coil 221 244 - -
Vifa1g07416 376 SMART BTB_4 67 167 IPR000210 GO:0005515
Vifa1g07416 376 Gene3D - 168 241 - -
Vifa1g07416 376 ProSiteProfiles Zinc finger TAZ-type profile. 241 339 IPR000197 -
Vifa1g07416 376 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 43 368 IPR044513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07416 Vifa-Chr1 1142992490 1142994545 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vifa1g07416 BTB 1.3e-09 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07416 - - lja:Lj2g3v1968190.1 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07416 1 1142992490 1142994545 Vifa1g07416 1 1142992490 1142994545 ECH