Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07415 ATGAAACTTCATAATTCAACCTTCAATATCACAATCATTTTCTTCTTGTTCTTGTTCTTCATCTTCTTCTTCACACTCTCTGTATCAATCCCAGTCAACACTACAAAAAATGAATCTGATCATCTTAGGAGGATTCTCCATCAACCATTATTTCCGGCCACATCAGCTCCCCCACCAACCCCCACCGTCACACCACCACCGCCTTCCCCGAACAACATTCCATTCTTCCACGAATATCCAGAAGGACCACCGGTGAGTCAGAATCAAGCAGCACCGGTAATATCAACACCAAACGCTTCAACGGCGAATCCGACGGCAACACAACCGGCAAAAGGAACCAAAAAAGTAGCCATTGTGATCTCAGTTGGAATTGTGACGCTTGGAATGTTGTCGGCGTTGGCTTTCTTTTTATACAAACACAGAGCAAAACACCCTGCGGATACACAGAAGCTAGTGTGTGATAACACACAGAGGAATAACAACAATCAACACGATTCAAATTCAACTGCTCCGGTACCGTCAAGTTTTCTCTATATTGGAACTGTGGAACCTTCCGGAAGGTCAACGACGGTCAACGATCTCAGAGAAACAGAGAAGCCGAACCGTTCGCCGTATCATAAACTGAATTCCGTTAAGCGATCCGATCGGTATCGACCGAGTCCTGAATTGCAGCCAATGCCGCCGTTGAGTAAGCCTCATGCCGACGGGAACCTCCCGCCGGCGATGTCTGCGTCTTCTTCCGATGAGGAAAGTAACGAGACAGCGTTTCATTCGCCGCAGAACTCGTCGGTAAGTCAGGAAGACGGATTTTACACGCCCGTTACCCGTCTCTTTAACGGTAGCTCGGTGAAGAGAGAGAATCATTCGACGGTTACGCCTCTTCCGTTATCGAAGAGAGCTTCGCCGAAATCTCGTCTTTCTGCTGCGTCGCCGGATATACGACACGTCATCATACCGTCTATCAAACAGACTCCGAATCCACCACGTAAGCAACCGGATAAACAGTTAATCATCGGAGGAGGACATTCAAGGAAGCCGAAATTCTCAGGACCGCCGCCACCTCCGAATTTGGCTCATCTTCAATCAACAACTAGTTCATTTTCTCATGTGTCCAAGACTCCTGCACCACCTCCACCTCCACCACCACCTCCACCTCCACCTCCGCCAATGATTCGAAGATCATTGTCGCCACCGACGGTTTCAGCATCTTCTGCATCTATAAAGAGGCTAAGTGTAGGAGATCACTCAGCTTTTAGTGTAACAAAAGGTTCAGACTCTGTTTCAGATCATGTTGATAATAATGATGAGAATGTGAGATCTTCTTCGGAGAGATTTGAAGGCGAAGCCGAAACCGAAACGGAGAGTGGAAAACCGAAGTTGAAAGCTTTGCATTGGGATAAAGTTCGAGCTACTTCCGACCGAGCTACCGTGTGGGACCAAATAAAGTCAAGTTCATTTCAATTAAATGAGGATATGATGGAGTCCTTGTTTGGCTGCAACAACTCAACAAACTCTGCGCCAAAACCGAAAGAACAAGGTGTTAGAAAATCAGTTCTTCCCTCTGCTGATCATGAGAACAAGGTGTTAGATCCTAAGAAGTCACAAAACATAGCTATACTTCTAAGGGCACTGAATGTGACAAGAGATGAGGTTTCTGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGTGCTGAGCTATTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAATTGAAAAACTTCAACGGCGATCTCTCGAAACTTGGATCTGCAGAGAGATTTCTTAAAGCAGTGCTTGATATCCCTTTTGCCTTCAAAAGAGTTGAAGCTATGCTATACAGAGCCAATTTTGATTCAGAAATCAACTACCTCAAGAAGTCTTTCCAAACCCTTGAGGCAGCAAGTGAGGAATTGAGGAACAGTCGATTATTTTTCAAACTCCTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGTCGGCACTAATCGAGGAGACGCTAAAGCTTTCAAACTTGACACACTCCTAAAACTCGCAGATATAAAGGGAACAGATGGGAAAACCACGTTACTCCACTTTGTCGTCCAAGAGATCATTAGATCCGAAGGTGCAGAAACTGAATCTGCAAACGGAAGTATTCCCGAACAAATGGAGTCCAAATTTAACGAGGAGCAGTTTAAGAAGAAAGGATTGCATGTTGTGGCTGGTCTCAGTAAAGACCTTGATAGTGTCAAAAAAGCAGCAGGAATGGACTCAGATGTCTTGAGCGGCTACGTAACAAAGCTTGAAACGGGGCTTGAAAAAGTGCGGTTCGTTTTGCAATATGAAAAGCCTGATATGAGAGGCAAATTCTTTAATTCCACAAAACTCTTTTTGAAATATGCAGAAGATGAAATTGTGAAAATTAAGGCTCATGAGAGAGAGGCTTTATTCCTTGTTAAAGAAGTCACTGAATACTTTCACGGGAATGCAGCAAAGGAAGAAGCACATCCTTTAAGAATTTTCATGATTGTGAGAGACTTTCTAAACATTTTGGATTTGGTGTGCAAAGAAGTGGGAAGGATGCATGATAGAATTGTCGGCGGCGCTTCAAGATCCTTCAGAATAGCTTCAAATGCACCATTACCGGTTCTTAACAGGTACAATGGGAAACAAGATAGAAGCTCGGATGAGGAAAGCTCATCATCCCCTTAA 2712 0.4432 MKLHNSTFNITIIFFLFLFFIFFFTLSVSIPVNTTKNESDHLRRILHQPLFPATSAPPPTPTVTPPPPSPNNIPFFHEYPEGPPVSQNQAAPVISTPNASTANPTATQPAKGTKKVAIVISVGIVTLGMLSALAFFLYKHRAKHPADTQKLVCDNTQRNNNNQHDSNSTAPVPSSFLYIGTVEPSGRSTTVNDLRETEKPNRSPYHKLNSVKRSDRYRPSPELQPMPPLSKPHADGNLPPAMSASSSDEESNETAFHSPQNSSVSQEDGFYTPVTRLFNGSSVKRENHSTVTPLPLSKRASPKSRLSAASPDIRHVIIPSIKQTPNPPRKQPDKQLIIGGGHSRKPKFSGPPPPPNLAHLQSTTSSFSHVSKTPAPPPPPPPPPPPPPPMIRRSLSPPTVSASSASIKRLSVGDHSAFSVTKGSDSVSDHVDNNDENVRSSSERFEGEAETETESGKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCNNSTNSAPKPKEQGVRKSVLPSADHENKVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGAELLETLVKMAPTKEEEIKLKNFNGDLSKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDSEINYLKKSFQTLEAASEELRNSRLFFKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLADIKGTDGKTTLLHFVVQEIIRSEGAETESANGSIPEQMESKFNEEQFKKKGLHVVAGLSKDLDSVKKAAGMDSDVLSGYVTKLETGLEKVRFVLQYEKPDMRGKFFNSTKLFLKYAEDEIVKIKAHEREALFLVKEVTEYFHGNAAKEEAHPLRIFMIVRDFLNILDLVCKEVGRMHDRIVGGASRSFRIASNAPLPVLNRYNGKQDRSSDEESSSSP 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07415 903 MobiDBLite consensus disorder prediction 156 191 - -
Vifa1g07415 903 MobiDBLite consensus disorder prediction 372 394 - -
Vifa1g07415 903 MobiDBLite consensus disorder prediction 240 297 - -
Vifa1g07415 903 SUPERFAMILY Formin homology 2 domain (FH2 domain) 378 861 - -
Vifa1g07415 903 Pfam Formin Homology 2 Domain 453 851 IPR015425 -
Vifa1g07415 903 ProSiteProfiles Formin homology-2 (FH2) domain profile. 450 877 IPR015425 -
Vifa1g07415 903 PANTHER FORMIN-RELATED 19 896 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa1g07415 903 MobiDBLite consensus disorder prediction 396 410 - -
Vifa1g07415 903 MobiDBLite consensus disorder prediction 884 903 - -
Vifa1g07415 903 SMART it6_source 450 866 IPR015425 -
Vifa1g07415 903 MobiDBLite consensus disorder prediction 156 458 - -
Vifa1g07415 903 MobiDBLite consensus disorder prediction 192 219 - -
Vifa1g07415 903 MobiDBLite consensus disorder prediction 428 458 - -
Vifa1g07415 903 Gene3D Formin, FH2 domain 423 869 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07415 Vifa-Chr1 1142987423 1142991295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07415 441 892 FH2 protein (formin) Gene Family AT5G67470 70.330 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07415 - - gmx:100798670 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07415 1 1142987423 1142991295 Vifa1g07415 1 1142987423 1142991295 ECH
Vifa1g07415 1 1142987423 1142991295 Vifa4g02722 4 846537963 846541866 PCT