Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07407 ATGGCTTGTAAACCTGGTTGGTTTGGAACCTTTATGTGCCTCTATTGCACAATCTACACCATCATTTTCTTTTTTGTTCTTCTCTCAATTGTTTTCTGGATAGTAATCTCCCCTTCAAGCGTGAAATTCCATGTAACCGACGCTACTCTCACCGAGTTTAACCTCACAAACAACAACAATACATTATACTACAATTTCAAACTCAACGTCACCGTGAGAAACCCCAACAACAATATCATAGTCTATTATCGAAGAATCACTGCATTTGCTTGGTACAAAGACAATAATTTTGGTTATGTGAGTTTGACACCGTTCGACCAAGGACACAAAAATACAACATTTCTGGGACCGATTGTGTTTAATGGAAATACTAAGATCAAACTCGGACGTAAACAAGTTGATGAGTATAGCCAAGAGACGCGTGTTGGGATTTACAATGATTTGGCAGTTGATTTTGATATTAAAATTAGAGCTAAGTTTGGAAGCTTTTATAAGAGTGGAAGGTTTAATACACCGGTCGTGCAGTGTCGTCGTTTGAGAGTTCCTTTGATTTCTGCTAACTCATCATCTTCATCAACAACATTTTCTTTTAGTGACAGAAGATGTAGCAGCGCTTCTTTCTTTGCAGATCGTGATGCAGATGCAGGAGCTGGATATGTATAA 663 0.3816 MACKPGWFGTFMCLYCTIYTIIFFFVLLSIVFWIVISPSSVKFHVTDATLTEFNLTNNNNTLYYNFKLNVTVRNPNNNIIVYYRRITAFAWYKDNNFGYVSLTPFDQGHKNTTFLGPIVFNGNTKIKLGRKQVDEYSQETRVGIYNDLAVDFDIKIRAKFGSFYKSGRFNTPVVQCRRLRVPLISANSSSSSTTFSFSDRRCSSASFFADRDADAGAGYV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07407 220 PANTHER OS05G0367900 PROTEIN 12 189 IPR044839 GO:0098542
Vifa1g07407 220 Pfam Late embryogenesis abundant protein 69 168 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07407 Vifa-Chr1 1139943027 1139943689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07407 35 191 SNARE and Associated Proteins AT1G32270 31.210 3.60e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07407 - - gmx:100784278 238.81