Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07398 ATGTATCAAATTCCTTTCTCTGCATTTCAAAACCAAAACCCATTATCAATGTCATTCATCACCCACTCATCACCATCTTCTTCCCCTTTCACCATTGCCACCTCTATGGGATTCACTCCCACCCCTTCAAATCTCACTTTCAAAACCACAACTACTTTCCCTTTCTCTTTCTCCTCCACCAGAAACCGCTCCCGTTTTGCCTTAGTTGTCAGAGCCAAAACTGAAACTGATTACTACTCAACATTAAATGTTAGTAACAACGCTTCGTTGCAAGAAATCAAAAGCTCCTACCGGAAACTTGCTCGCAAGTACCATCCGGATATGAACAAAAGCCCTGGAGCAGAAGAGAAGTTCAAGGAGATTGGTGCTGCATACGAGGTAATTCTTCTACCACTACAATGCTATATTCTCTATTGTCAACTATCAATGAAGCTCCGAAATTGA 444 0.4167 MYQIPFSAFQNQNPLSMSFITHSSPSSSPFTIATSMGFTPTPSNLTFKTTTTFPFSFSSTRNRSRFALVVRAKTETDYYSTLNVSNNASLQEIKSSYRKLARKYHPDMNKSPGAEEKFKEIGAAYEVILLPLQCYILYCQLSMKLRN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07398 147 ProSiteProfiles dnaJ domain profile. 77 142 IPR001623 -
Vifa1g07398 147 PRINTS DnaJ domain signature 79 97 IPR001623 -
Vifa1g07398 147 PRINTS DnaJ domain signature 97 112 IPR001623 -
Vifa1g07398 147 PRINTS DnaJ domain signature 113 133 IPR001623 -
Vifa1g07398 147 SMART dnaj_3 76 133 IPR001623 -
Vifa1g07398 147 Gene3D DnaJ domain 57 132 IPR036869 -
Vifa1g07398 147 Pfam DnaJ domain 77 128 IPR001623 -
Vifa1g07398 147 CDD DnaJ 77 127 IPR001623 -
Vifa1g07398 147 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 37 127 - -
Vifa1g07398 147 SUPERFAMILY Chaperone J-domain 43 128 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07398 Vifa-Chr1 1139042522 1139043902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07398 78 131 C2H2 Transcription Factor Family AT1G74250 41.667 3.06e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07398 K03686 - lja:Lj0g3v0267619.2 122.094