Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07395 ATGAGTTGTAACGGTTGTCGTGTCCTTAGAAAGGGTTGTAGTGAGTCTTGTATCTTACGCCCTTGTATTCAATGGATCGATACTCCTGAATCACAAGGCTATGCCACTGTCTTTGTAGCCAAGTTTTTCGGTCGTGCTGACCTTATGTCTTTCATTTCAAACGTCCCTCAACCACAAAGACCCGCTTTGTTTCAATCTCTGTTGTTTGAAGCGTGTGGACGGACGGTTAACCCCGTTAACGGTGCTGTAGGGCTTTTATGGACAGGAAACTGGCACGTCTGTCAAGCGGCAGTTGAAACCGTTCTCCGCGGCGGAACCCTTGGGCCTATACCTGACCTTCTCGGTTTAGACGACCCATCCGAAGGGGAAGTCACGTGTAAGGAATCTCGGAAGATCCGAGATCCGAACTCGAATTTCCGGTTTGTGAGTTCCGGTGGAAAACGTAAGCGATCGGGTGAAGCTGCGACGACTGATCTTAATCTCCGGTTGACGCCGTGTTTTCTTCAGAACGCGTTGACCAACCGGAGAGAGGTTCGCCGGCAGGGGACACCGTCGTTGAATTCTGAGGAATCTGTGACGACGACGACGTGTTTGGAGAGTAGGAACGGAAATGAGTACGTTCACGACGGAGACCGGAAAGTTCTAAACTTTTTTGTTTGA 660 0.4985 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGYATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLGPIPDLLGLDDPSEGEVTCKESRKIRDPNSNFRFVSSGGKRKRSGEAATTDLNLRLTPCFLQNALTNRREVRRQGTPSLNSEESVTTTTCLESRNGNEYVHDGDRKVLNFFV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07395 219 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vifa1g07395 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 204 - -
Vifa1g07395 219 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07395 Vifa-Chr1 1138426909 1138427666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07395 1 219 AS2 family AT3G49940 53.571 4.48e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g07395 LOB 2.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07395 1 1138426909 1138427666 Vifa4g02715 4 841082404 841083188 ECH
Vifa1g07395 1 1138426909 1138427666 Vifa1g07395 1 1138426909 1138427666 ECH
Vifa4g02715 4 841082404 841083188 Vifa1g07395 1 1138426909 1138427666 PCT