Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07388 ATGGAACACTTACTCGTTCAATGTGCCAACGCCATAGAAACCAACAATGCAACACAAGCACAACAAATCCTTTGGGTCCTTAACAACACAACTCCCCAAGAAGGTGACTCCAATCAACGCTTAGCCGCAAGCTTCATTCGAGCTCTAACCACACGAATTCTCACCAAAACCGGTAGTTGCAAAATGCTAGAACAAGAAGATAACAATCTTAACGATAATAGCAACCTGGCCATACAAACACACAATTTCTCTGTTATTGAACTAGCCAGCTTCGTCGATTTAACGCCGTGGCATCGTTTCGGTTACACAGCAGCAAACTCCGCGATTCTAGAAGCCACCAAAGGTTTTTCTGTTATTCACATTGTTGATTTGAGTTTAACACATTGCATGCAGATTCCTACACTAATCGACGCTATTGCTACTCGCGACGATGTTCCTCCTTCAATCAAGCTCACAGTTGCAGTTCGAAATAGTAATGTTCATATTCCAATCCCACCTTTGCTTGATCTTTCTTACGACGAATTAGGTTCGAAACTCGTTAGTTTTGCTAAATCAAGAAACGTGAATATGGAATTCAAAGCAGTTTCTTCAACTTATGCAGATGGATTCGCTTCTTTGATCGAACACCTACGAGTACAAGTCCAAGATTTAGCTTATAACATAACTCATGAAGCATTGGTAATAAACTGTCACATGATGCTTCATTATATTCCAGAAGAAACTCTATATATGAATATGAATACTAAATCTTCTTCGCTCCGGTCGATGTTTCTAGAAGCTCTGCGAGATTTAGAACCGACAATTGTAGTTTTGGTAGACGAAGACGCTGACTTAACCTCGAGTGATTTAGTGACTAGACTAAGGTCTGCATTTAACTATCTTTGGATCCCTTTCGACACGGTGGACACGTTTCTACCGCGAGGGAGTAAAGAAAGGCATTGGTATGAATCAGATGTATGTTGGATGATTGAGAATGTGATAGCATATGAAGGGATTCAAAGAGTTGAGAGAGTTGAGGGTAAAACCAAGTGGGAGCAAAGAATGAGAAATGCGCATTTTCAAGGGGTTTGTTTCAGTGAAGATTTGACTATCGAGGTTAAGGGGATGCTTCATGAACATGCAGTGGGATGGGGATTCAAGAAAGAAGATGAGTTTCTTTTGCTTACTTGGAAAGGACATAATGTTATATTTGCTTCTGCTTGGTTACCTTCTTGA 1215 0.4041 MEHLLVQCANAIETNNATQAQQILWVLNNTTPQEGDSNQRLAASFIRALTTRILTKTGSCKMLEQEDNNLNDNSNLAIQTHNFSVIELASFVDLTPWHRFGYTAANSAILEATKGFSVIHIVDLSLTHCMQIPTLIDAIATRDDVPPSIKLTVAVRNSNVHIPIPPLLDLSYDELGSKLVSFAKSRNVNMEFKAVSSTYADGFASLIEHLRVQVQDLAYNITHEALVINCHMMLHYIPEETLYMNMNTKSSSLRSMFLEALRDLEPTIVVLVDEDADLTSSDLVTRLRSAFNYLWIPFDTVDTFLPRGSKERHWYESDVCWMIENVIAYEGIQRVERVEGKTKWEQRMRNAHFQGVCFSEDLTIEVKGMLHEHAVGWGFKKEDEFLLLTWKGHNVIFASAWLPS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07388 404 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 391 IPR005202 -
Vifa1g07388 404 Pfam GRAS domain family 1 401 IPR005202 -
Vifa1g07388 404 ProSiteProfiles GRAS family profile. 1 402 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07388 Vifa-Chr1 1137664970 1137666184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07388 1 403 GRAS Transcription Factor Family AT3G49950 56.341 6.14e-161 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g07388 GRAS 2.7e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07388 - - mtr:11421838 634.795