Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07381 ATGTTGTGGGTTGACAAGTATCGTCCCAAGACTCTCGACCATGTTATGGTTCACAATGATATTGCTCAAAATCTCAAGAAATTGGTTACTGAGCATGATTGCCCTCATTTGTTGTTCTATGGCCCATCGGGCGCTGGCAAGAAAACACTAATTATGGCTCTTCTCCGCCAAATGTTTGGACCTGGTGCTGAAAAGGTGAAGGTGGAGAACAGGGCGTGGAAAGTTGATGCTGGGAGTAGATCTATTGATTTAGAGCTGACTACATTATCAAGTGCCAATCATATTGAAATGACTCCAAGTGATGCAGGCTTTCAGGACAGATACATTGTTCAAGAAATAATCAAAGAAATGGCCAAGAATAGACCCATTGATACTAAGGGGAAGAAAGGATTTAAAGTACTAGTGCTTAATGATGTTGACAAACTCTCTAGAGAAGCCCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCAAGAGTAACAGAAGCAATTCGCTCTCGTTGTCTTAATATTGTTGAAGTTTTACAGTTCATTGGTAAGAAAGAAGGACTTCAACTTCCTCCTAACTTTGCTGCTCGCATAGCAGAGAAATCTAACAGGAATTTAAGGAGGGCCATATTGTCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTTACTGACAAGCAAACAATTTCTCCAATGGACTGGGAAGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGCTGTTTCAAGTTCGGGGAAAGCTGTATGAGTTGCTGATCAATTGCATTCCTCCAGAGATTATTTTGAAGAGGCTTCTTTATGAGCTCTTGAGGAAACTAGATGCAGAACTGAAGCATGAAATCTGCCACTGGGCAGCATATTATGAGCATAGGATGCGCCTTGGGCAGAAGGCAATTTTTCACATCGAAGCATTTGTGGCTAAGTTCATGAGCGTCTACAAATCCTTCCTCATTGCAACATTTGGCTGA 1035 0.4087 MLWVDKYRPKTLDHVMVHNDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNIVEVLQFIGKKEGLQLPPNFAARIAEKSNRNLRRAILSFETCRVQQYPFTDKQTISPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07381 344 SUPERFAMILY post-AAA+ oligomerization domain-like 241 336 IPR008921 GO:0003677|GO:0006260
Vifa1g07381 344 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 328 - -
Vifa1g07381 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 230 IPR027417 -
Vifa1g07381 344 FunFam replication factor C subunit 3 182 238 - -
Vifa1g07381 344 Gene3D - 185 240 - -
Vifa1g07381 344 Pfam DNA polymerase III, delta subunit 18 184 - -
Vifa1g07381 344 Gene3D - 242 335 - -
Vifa1g07381 344 FunFam Replication factor C subunit 3 242 335 - -
Vifa1g07381 344 SMART AAA_5 33 188 IPR003593 GO:0016887
Vifa1g07381 344 FunFam Replication factor C subunit 5 1 188 - -
Vifa1g07381 344 CDD AAA 35 187 - -
Vifa1g07381 344 Gene3D - 1 184 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07381 Vifa-Chr1 1136599978 1136603780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07381 1 344 Core DNA Replication Machinery Family AT5G27740 82.486 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07381 K10756 - gmx:100818329 640.188