Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07380 ATGAAACTCTTCTTCTTTTTCCTCTTTATTCTTCCTTTTGTAAAACCTGACTTAACTTCCGAACGCGCCGCCCTCTTAAACCTACGCGCCGCCGTTGGCGGCCGTACCTTTCTCTGGAACACCACCTCTGCAACTCCATGTAACTGGTCCGGCGTCAAATGCGACCAAAACCACACTCACGTTGTCGAGCTTCACCTCCCTGCCGTTTCACTCACCGGTAAAATCCCCGCCGGTGTATTCTCCGACCTCCGTAACCTCCACACACTCAGCCTCCGTTTCAACTCCCTTTCCGGTCCTCTCCCCTCAGACCTCTCCGCTCTCACCTCACTCCGTAACCTCTACCTCCAGCAGAATCTCCTCTCCGGCGAACTCCCGGCGACATTCTTCCATCTCACCGGTCTAGTCCGTCTGAATTTAGCTTCCAATAACTTCTCCGGCGAAATTCCGGTTGGGTTTCAAAACCTAACCCGGTTGAAAACCTTATACCTTCAAAACAACCAGTTCACCGGTTCTCTTACCGAGTTGAACCGGGTCGAACTCGCTCAGTTTAATGTCTCAAATAACAACCTAAACGGTTCAGTTCCTGAAAAGTTGCAAACTTTTGGTAAAGATTCGTTTTTGGGTAATAATCTCCTATGTGGAAAACCCCTAAACCCTTGTCCTAATGAAGGAAGTGCAAGTAGTGGAAATGGAGGTGAAAATAGAAACTCTTCTGTGGTTGGTGATAATCAAGGGCTTGTGAAGAACAAGGAGAAAAGCAAATTATCTGGTGGTGCTATAGCTGGAATTGTTATTGGGTCTGTTGTGGTTCTTTTGTTTGTAGTTTTTGCTTTGATTGTTATATGCAAGAATAAAAATGGTGAAAAAACTAGTTCAATTGATGAAGTTGCTGCAACTTTGAAGCATAATCAGCAGGATGAGGGGATACATAGTGAGAATGTTGGAAATGGGAATGGAAATGGAAATGGAAATGGGTATTCGTCGGCCGCAGCTCTGGTGGTGCCGGCCGCGGTGAGTGAAGGTGTGGTTGTTGGTGGTGGTGAGAAAAAGTTGGTGTTTTTTAGGAATTGGGGTAAGGTGTTTGGTTTGGAGGATTTGTTAAGAGCTTCTGCTGAGGTATTAGGAAAAGGAACTTTTGGGACATCTTATAAGGCAGTTTTGGAGGTTGGTCCCGTGGTTGTGGCTGTGAAGAGACTAAGGGATGTGACCATTTCGGAGAAGGAATTTAAGGAGAAGATCGAGAGGGTCGGAACAATGGTTCATGAGAATTTGGCACCTCTTAGGGCTTACTATTATAGTAGAGATGAGAAGCTTCTTGTTCATGATTATTTGCATATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGGAGGTAGGACACCTCTGACTTGGGAAATGAGAACAGGTATTGCACTCGGAGCTGCTCGTGGTATCGAGTACCTACATTCGCAAGGGCCTAACGTTTCACATGGAAACATAAAATCATCTAACATCCTTCTAACCAAGTCCTATGATGCGAGAGTATCTGATTTTGGTCTCGCACATCTTGTTGGTCCTTCATCCACACCCAACAGGGTAGCCGGTTACCGTGCTCCCGAGGTAACCGATCCTCGAAAAGTATCTCAGAAAGCCGATGTATACAGCTTCGGTGTACTACTCTTGGAACTTCTTACCGGAAAAGCTCCAACTCACGCCCTCATGAACGACGAAGGAGTGGACCTTCCAAGATGGGTGCAATCGGTTGTTAAAGAAGAATGGACCTCCGAGGTCTTTGATCTCGAACTACTTAGGTACCAAAACGTTGAAGAGGAAATGGTTCAGCTGTTACAACTTGCAGTAGATTGTGCAGCAACGTACCCCGATAACCGCCCTTCGATGTCGCAAGTCAGACAGCACATAGAAGAGTTGCATAAGTCTAGCTTGAAAGAGGGTTCTCGTGACCAAATTCAACACCCTGATTTGATCAATGACATAGATGATATCTCTTCTAGATGA 2001 0.4583 MKLFFFFLFILPFVKPDLTSERAALLNLRAAVGGRTFLWNTTSATPCNWSGVKCDQNHTHVVELHLPAVSLTGKIPAGVFSDLRNLHTLSLRFNSLSGPLPSDLSALTSLRNLYLQQNLLSGELPATFFHLTGLVRLNLASNNFSGEIPVGFQNLTRLKTLYLQNNQFTGSLTELNRVELAQFNVSNNNLNGSVPEKLQTFGKDSFLGNNLLCGKPLNPCPNEGSASSGNGGENRNSSVVGDNQGLVKNKEKSKLSGGAIAGIVIGSVVVLLFVVFALIVICKNKNGEKTSSIDEVAATLKHNQQDEGIHSENVGNGNGNGNGNGYSSAAALVVPAAVSEGVVVGGGEKKLVFFRNWGKVFGLEDLLRASAEVLGKGTFGTSYKAVLEVGPVVVAVKRLRDVTISEKEFKEKIERVGTMVHENLAPLRAYYYSRDEKLLVHDYLHMGSLSALLHGNKGGGRTPLTWEMRTGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALMNDEGVDLPRWVQSVVKEEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAATYPDNRPSMSQVRQHIEELHKSSLKEGSRDQIQHPDLINDIDDISSR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07380 666 FunFam pollen receptor-like kinase 1 338 443 - -
Vifa1g07380 666 ProSiteProfiles Protein kinase domain profile. 368 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07380 666 FunFam Probable inactive receptor kinase RLK902 18 176 - -
Vifa1g07380 666 Gene3D Ribonuclease Inhibitor 18 175 IPR032675 -
Vifa1g07380 666 MobiDBLite consensus disorder prediction 222 245 - -
Vifa1g07380 666 SUPERFAMILY Protein kinase-like (PK-like) 372 640 IPR011009 -
Vifa1g07380 666 SUPERFAMILY L domain-like 34 219 - -
Vifa1g07380 666 Gene3D Ribonuclease Inhibitor 179 220 IPR032675 -
Vifa1g07380 666 Gene3D Transferase(Phosphotransferase) domain 1 444 661 - -
Vifa1g07380 666 Pfam Leucine rich repeat 125 168 IPR001611 GO:0005515
Vifa1g07380 666 Pfam Leucine rich repeat 61 120 IPR001611 GO:0005515
Vifa1g07380 666 PANTHER OS05G0588300 PROTEIN 4 642 - -
Vifa1g07380 666 MobiDBLite consensus disorder prediction 222 244 - -
Vifa1g07380 666 Gene3D Phosphorylase Kinase; domain 1 349 443 - -
Vifa1g07380 666 FunFam Probable inactive receptor kinase At1g48480 444 647 - -
Vifa1g07380 666 Pfam Leucine rich repeat N-terminal domain 20 55 IPR013210 -
Vifa1g07380 666 MobiDBLite consensus disorder prediction 642 666 - -
Vifa1g07380 666 Pfam Protein kinase domain 371 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07380 Vifa-Chr1 1136563960 1136566177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07380 17 655 Receptor kinase-like Gene Family AT1G48480 58.879 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g07380 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07380 - - gmx:100781597 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07380 1 1136563960 1136566177 Vifa1g07380 1 1136563960 1136566177 PCT