Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07376 ATGGTCTTCAAGGGAAGATTCTTCTCTTCTAAAAAATCTGATACTTCTAGTCCAGATGGTTCTTCCAATAGTCCTCGATCAATCTCTTCAAACTCTCCTAGATCCGATAAGAAAAAACCTAAATCAACCGTTGCTCAAACCCTAACCTCCACATTCACCTCCGCCGCCGGAACTACCAGCGGCGGCGGCGCTGGAAGTGGACTCGGTGCGTCTAGCCGGAAGACGCAAGTTAATGAAGGAACTAAGAAGAAGGATGCTGTAAAAGGAAAGGAGAGTGAGATTCTGTTGGAATCTCGCTCTAGGCCTGGTTCGAAGAAATTGACTCCGGCGAAGGTGGCGGAGGTGAAGGAGTTACCGTCGACTTCGTCTGCTGCGGCTTCTGTTTCGCCGATTTTAGCGTCGTCGTTAGGGTTGAACCGGATAAAGACGAGATCGGGACCGTTACCGCAGGAGAGTTTCTTTGGTTTTAGAGGTGATAAGGGAGGAGCTGCGGCGGCACTTGGTGCTAGTAATCTTTCGAGGCCTGCTGTTGGGAAGAAGAAGGAGGTTGGGAGTCAGAATAGAGTAGGGTTTCGGGATGGTTTGGGAATTGGTGCTAGTGTTGATAATGGAAGCGGTTCGGGTAGTATGTTGACGGGGAGTGGCGCACAGACGATGGAACAGAGTCCGGTAGTGACACTACCTCGGTCGCGGTTGCAGAATGGTGAATCGTCTTTGGAAGCAGGAGAGCAGGCATCATCACAGACTCAGACTGGAGGCTTAAGAAGTGAAGATGTTTGCACGCCAGAGGCCACATATGATTTTGAAAATCCGAAAGAATCTGAATCTCCTCGTTTTCAAGCTATATTACGTGTCACAAGTGCCCCCGGAAAGAGGTTTCCTGGTGATATAAAGAGTTTTTCGCACGAGTTAAATTCTAAAGGTGTCCGGCCTTTTCCGTTTTGGAAGCCTCGAAGGTTAAATAATAACCTTGAGGAGATCTTGGTTGTTATTAGGGCTAAATTTGATAAAGAAAAGGAAGAGGTGAACTCTGAACTGGCTATTTTTGCAGCAGACCTGGTTGGAGTTCTTGAAAAAAATGCAGATAATCATCCGGAATGGCAAGAGACAATTGAGGACTTGCTAATTTTGGCCAGGCGCTGTGCTATGACCACATCTGGGGAGTTTTGGCTTCAGTGTGAAAGCATAGTTCAGGACTTGGATGATAGGCGTCAAGAGCTTCCTCCGGGGACACTAAAGCAGCTTCATACTCGAATGCTCTTCATTCTTACACGGTGTACTAGGTTGTTGCAATTCCACAAGGAAAGTGCTTTGGCTGAGGATGAACACTTTGTCAATCTCCGTCAATCCAGAGTCTTGCATTCTACTGGAAAATCTATTCCTCCTAGTGCGGTAAGGGATTCTAAAATTTCTGGTGTTGCAAAGATCTCGAAGGCTTCAACAAAAAAAGCTTATAGCCAAGAGCAGAGTACCATGGGTTGGAAAAAAGGTGTCTTGAAACCAGAGATTCAGTTGCCTCCTGCTGATGATGACATTTTAAAAAACTTTGAGTCTCCGGGCAGGAATCGGATGGCTTCATGGAAAAAATTCCCATCTCCATCAGAAAAAAGCCCAAAAGAAACTGTTCAATTGAAGGACCGAAGTTATGGGACAGTCGATGTTGAACCTTCAAAGCCATCAGTTAAGAAATTAAATTCTGATATAGATCTCTCTGCTGCCAAGCCTTCTGAGCTTCTTGTCAAAGATTCCCATGACCATGCTTCGAAGCACCAACATAAAGTTTCCTGGGGCTATTGGGGAGACCAGCAGAATAATAATGAAGATAATTCAATAATTTGTCGAATATGTGAAGAGGATGTACCGACTTCTCATGTTGAAGATCATTCAAGGATTTGTGCAGTTGCTGACAGATGTGATCAGAAGGGTCTGAGTGTCAATGAGCGTCTTGTAAGAATTTCTGAAACATTAGAAAAGATGATGGAATCATCTACTCAGAAGGATGCACAACAAATGGTCGGAAGTCCTGATGTTGCAAAAGTGTCGAATTCAAGTATGACTGAAGAATCTGAAGTTCTTTCCCCTAAACTTAGTGATTGGTCACGCAGAGGCTCAGAGGATATGCTAGACTGTTTCCCTGAACCTGATAATTCCGTTTTTATGGATGAGCTGAAGGGATTGCCACTTATATCATGTAGAACTCGTTTTGGTCCAAAGTCTGACCAAGGTATGACAACATCATCTGCAGGGAGCATGACTCCTAGGTCTCCTTTATTGACACCAAGGACAAGTCAGATTGACTTGCTCTTGGCGGGGAAGGGTGCTTATTCTGAACATGATGATCTGCCTCAGATGAATGAACTTGCTGATATAGCACGCTGTGCAGCCAATGTTAGTCTGGATGATGATCGTACAGCTTCGTATTTATTATCTTGTCTTGATGATTTGAGGGTTGTCGTAGAACGAAGGAAGTTCGATGCACTTACCGTGGAAACCTTTGGAACACGCATTGAGAAGCTGATCCGTGAGAAGTATTTGCAGCTTACCGAGATGGTGGATATCGAAAAGATAGATGTAGATAGCCCTGTAATGGATGATGATGTCATCTTGGAAGATGACGTGGTTCGTAGCTTGAGAACAAGCCCAATTCATTCTTCAAAGGATCGTACCTCTATTGATGACTTTGAGATTATAAAACCTATCAGTCGCGGGGCATTTGGAAGGGTTTTCTTGGCTAAGAAGAGGACGACGGGTGATCTTTTTGCAATAAAGGTTCTTAAGAAAGCAGATATGATCCGTAAGAATGCTGTAGAAAGTATATTAGCAGAACGTGATATTTTAATTACAGTGCGCAATCCTTTTGTGGTTCGATTTTTCTATTCTTTTACATGTCGTGAGAACTTGTATCTTGTCATGGAATATCTGAATGGTGGAGACTTGTATTCATTACTAAGGAACTTAGGTTGTCTAGACGAGGAAGTGGCCCGTGTATATATGGCTGAAGTGGTTCTTGCATTAGAGTATTTGCATTCGTTGCGTGTGGTTCATCGTGACTTGAAGCCTGACAATTTATTGATTGCACATGACGGTCATGTCAAGTTGACAGACTTTGGGCTTTCAAAAGTTGGTCTCATCAACAGCACAGATGACTTGTCTGGTCCGGCAGTGAGTGGGACATCCCTACTTGAGGAGGATGAGTCTGAAACATTTACATCGGAGGATCAAAGGGAACGGAGGAAGAAGCGTTCTGCTGTTGGCACACCCGATTACTTAGCTCCTGAGATACTTTTAGGAACTGGACATGGGTATACTGCGGATTGGTGGTCTGTTGGGGTCATTTTATTTGAGTTGCTTGTTGGTATTCCACCCTTCAATGCAGAGCATCCTCAGACTATATTTGATAATATTCTTAATCGTAAGATACCTTGGCCTGAAGTTCCTGAAGAAATGAGTCTTGAAGCACATGATCTTATTGATCGATTGTTGACCGAAGATCCTAATCAAAGACTAGGAGCTAGAGGGGCATCTGAGGTGAAGCAGCATGTTTTCTTCAAGGACATAAACTGGGACACGCTTGCCAGACAAAAGGCTGCATTTGTTCCTGCTTCTGAGAGTGCTCTAGACACCAGTTACTTCACTAGTCGTTACTCATGGAATACTTCTGACGGCCTTGTTTACCCGCCAAGTGATTTTGAAGATTCAAGTGATGCCGATAGCTTAAGTGGCAGCAGCAGTTGCCTGAGCAATCGACATGATGAAGTGCAGGGAGATGAATGTGGGGGTCTTGCCGAGTTTGATTCTAGTTCTTCCGCCAATTACTCTTTTAGTAATTTCTCCTTTAAGAATCTCTCCCAGCTTGCATCAATCAATTATGATCTCACCAAGGGATGGAAAGATGATCCCTCAACAAATTCTAGCGCATAG 3921 0.441 MVFKGRFFSSKKSDTSSPDGSSNSPRSISSNSPRSDKKKPKSTVAQTLTSTFTSAAGTTSGGGAGSGLGASSRKTQVNEGTKKKDAVKGKESEILLESRSRPGSKKLTPAKVAEVKELPSTSSAAASVSPILASSLGLNRIKTRSGPLPQESFFGFRGDKGGAAAALGASNLSRPAVGKKKEVGSQNRVGFRDGLGIGASVDNGSGSGSMLTGSGAQTMEQSPVVTLPRSRLQNGESSLEAGEQASSQTQTGGLRSEDVCTPEATYDFENPKESESPRFQAILRVTSAPGKRFPGDIKSFSHELNSKGVRPFPFWKPRRLNNNLEEILVVIRAKFDKEKEEVNSELAIFAADLVGVLEKNADNHPEWQETIEDLLILARRCAMTTSGEFWLQCESIVQDLDDRRQELPPGTLKQLHTRMLFILTRCTRLLQFHKESALAEDEHFVNLRQSRVLHSTGKSIPPSAVRDSKISGVAKISKASTKKAYSQEQSTMGWKKGVLKPEIQLPPADDDILKNFESPGRNRMASWKKFPSPSEKSPKETVQLKDRSYGTVDVEPSKPSVKKLNSDIDLSAAKPSELLVKDSHDHASKHQHKVSWGYWGDQQNNNEDNSIICRICEEDVPTSHVEDHSRICAVADRCDQKGLSVNERLVRISETLEKMMESSTQKDAQQMVGSPDVAKVSNSSMTEESEVLSPKLSDWSRRGSEDMLDCFPEPDNSVFMDELKGLPLISCRTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQIDLLLAGKGAYSEHDDLPQMNELADIARCAANVSLDDDRTASYLLSCLDDLRVVVERRKFDALTVETFGTRIEKLIREKYLQLTEMVDIEKIDVDSPVMDDDVILEDDVVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYMAEVVLALEYLHSLRVVHRDLKPDNLLIAHDGHVKLTDFGLSKVGLINSTDDLSGPAVSGTSLLEEDESETFTSEDQRERRKKRSAVGTPDYLAPEILLGTGHGYTADWWSVGVILFELLVGIPPFNAEHPQTIFDNILNRKIPWPEVPEEMSLEAHDLIDRLLTEDPNQRLGARGASEVKQHVFFKDINWDTLARQKAAFVPASESALDTSYFTSRYSWNTSDGLVYPPSDFEDSSDADSLSGSSSCLSNRHDEVQGDECGGLAEFDSSSSANYSFSNFSFKNLSQLASINYDLTKGWKDDPSTNSSA 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07376 1306 PANTHER SERINE/THREONINE-PROTEIN KINASE 632 1279 - -
Vifa1g07376 1306 ProSiteProfiles AGC-kinase C-terminal domain profile. 1184 1289 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa1g07376 1306 MobiDBLite consensus disorder prediction 1 108 - -
Vifa1g07376 1306 MobiDBLite consensus disorder prediction 1062 1083 - -
Vifa1g07376 1306 Pfam Protein kinase domain 894 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07376 1306 MobiDBLite consensus disorder prediction 77 100 - -
Vifa1g07376 1306 SUPERFAMILY Protein kinase-like (PK-like) 891 1227 IPR011009 -
Vifa1g07376 1306 CDD STKc_MAST_like 900 1188 - -
Vifa1g07376 1306 MobiDBLite consensus disorder prediction 523 561 - -
Vifa1g07376 1306 ProSiteProfiles Protein kinase domain profile. 894 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07376 1306 SMART serkin_6 894 1183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07376 1306 Gene3D Transferase(Phosphotransferase) domain 1 978 1201 - -
Vifa1g07376 1306 Gene3D Phosphorylase Kinase; domain 1 892 1212 - -
Vifa1g07376 1306 FunFam probable serine/threonine protein kinase IREH1 892 981 - -
Vifa1g07376 1306 MobiDBLite consensus disorder prediction 202 258 - -
Vifa1g07376 1306 MobiDBLite consensus disorder prediction 9 31 - -
Vifa1g07376 1306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1013 1025 IPR008271 GO:0004672|GO:0006468
Vifa1g07376 1306 MobiDBLite consensus disorder prediction 42 76 - -
Vifa1g07376 1306 MobiDBLite consensus disorder prediction 202 256 - -
Vifa1g07376 1306 Coils Coil 321 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07376 Vifa-Chr1 1136515304 1136528704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07376 68 1300 AGC Kinase Gene Family AT3G17850 66.533 0.0 1614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vifa1g07376 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07376 - - tpra:123913507 2183.3