Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07366 ATGAACATCACCGTTTCGTCGCGCTACGTCGTCGTTTTGAAGTTTCAGAGTCGCAGAAAACATGGCTTCAGTAGTTCCTTCGAATCAGTTTGGACAGATTATGCCGCAGAGAACGCGTACGAGCTTTTAGAAGTATCGGAAACAAGCTCATTTGCTGAGATCAAAGCGTCGTTTCGCAAATTGGCTAAAGAAACTCACCCAGACCTCGCTGAGTCAAGGAACGATTCCACTGCGTCGAGACGATTTGTTCAAATCCTCGCCGCATATGAGATTCTTTCAGATTCTAGGAAGAGAGCCCATTATGACATGTACTTGTTATCTCAGAAAAAGCTTATGCAGAAGCATTCTGTTCAGGGTTCAAAATTGCGCATTTACCAATCACAGTCTACGACATTCAAGGAGATGGAAGTTGTTGAATGGTTAAAGTGGTACAGATTAGCTATAAATGATATATTGTTGGAGAAGAAGGTGGTGGTTGGAACAGGATATTTTGATGTACTCGAGAGAGATTTTTATTCGGCTATTCATGCAGCATATTATGGTCCAGCAATTGATTCTATCCCCATGGAGCTTCTTCCTGACTGTTTTGAGGCTGAGGAGAGGTCCTCTTATGAAACTCCCGAGGTATTGCACTTGGTTTCTGGCCGTGATCTTTTTGGGATGGTTTGCCTAGGCAACATGATTCCGGAGATATCATCTACTGAACATGAAAAGTTAACTTCTTATAGATCCTTCCATTCAGGCCTTTGTCAATCTATAACGGATGTGAACACCCACAGGAATGTGGAAAGGCCAGATGATTTTGGAACTGAACAAGGTCTCAGCTCTAAAATTTCAAGTAATGTATCAGATGCATATAGAGACTTAGAATTGCACGTCTCTGGAAAATTAGTTGCTTCGGCATCTAGAGTCCTACCTGGATGTTGTTCAGGTGCGATGCAGAAGGAAGATGCTGAAGATCACATCCATGTGTACCTTAATTTGGATGAAGATCCCAGACATATCAGCAGTGGCTTTTCAAGAAATTTATTTGCAAATAGCACAGTTGGAAGCAGAATGCATTTGGGAACCATATCTGGACTTGGCAGCAGTCCAGATGAGGGATGTTGTGATGTCTACAACAGCAGTCGTGAAAAGACTCATGTGATTATGAAACATAGGACATTGTTGGTGAAGCATATGCACTGGTATCATGTGGGTGATAACGTTTCAGTTTGTGAGTGTAGATGCACCAGAGCACGTTTACCACCAAGCAAATTTTGGCTATTTGAGCCTCGATGTGGCTTCCATGACATAGGGGGTTGGTATGTCGAAACATATGGCAAAGATAAGAAGGGTCGCACTATGCCATCACAAAGATTCTGGGATGGCTTGGATTATAGCGAGCAAGCTGAAAGAAGACTTCATCCAGCAATGTATCTGTTTGCTCTTGCATATCGAACACTTGATCTTGAATATGCCAAAACAAGCAAGAAAACATTTAGGAATGCTGTTGGAGCACATATGTTCCGAATTCTCCACTGGTGCAGAAAACTTGCTCAATAG 1545 0.4239 MNITVSSRYVVVLKFQSRRKHGFSSSFESVWTDYAAENAYELLEVSETSSFAEIKASFRKLAKETHPDLAESRNDSTASRRFVQILAAYEILSDSRKRAHYDMYLLSQKKLMQKHSVQGSKLRIYQSQSTTFKEMEVVEWLKWYRLAINDILLEKKVVVGTGYFDVLERDFYSAIHAAYYGPAIDSIPMELLPDCFEAEERSSYETPEVLHLVSGRDLFGMVCLGNMIPEISSTEHEKLTSYRSFHSGLCQSITDVNTHRNVERPDDFGTEQGLSSKISSNVSDAYRDLELHVSGKLVASASRVLPGCCSGAMQKEDAEDHIHVYLNLDEDPRHISSGFSRNLFANSTVGSRMHLGTISGLGSSPDEGCCDVYNSSREKTHVIMKHRTLLVKHMHWYHVGDNVSVCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKKGRTMPSQRFWDGLDYSEQAERRLHPAMYLFALAYRTLDLEYAKTSKKTFRNAVGAHMFRILHWCRKLAQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07366 514 ProSitePatterns Nt-dnaJ domain signature. 82 101 IPR018253 -
Vifa1g07366 514 SMART dnaj_3 37 97 IPR001623 -
Vifa1g07366 514 CDD DnaJ 38 94 IPR001623 -
Vifa1g07366 514 Gene3D DnaJ domain 30 126 IPR036869 -
Vifa1g07366 514 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 9 512 - -
Vifa1g07366 514 PRINTS DnaJ domain signature 58 73 IPR001623 -
Vifa1g07366 514 PRINTS DnaJ domain signature 77 97 IPR001623 -
Vifa1g07366 514 PRINTS DnaJ domain signature 40 58 IPR001623 -
Vifa1g07366 514 Pfam DnaJ domain 38 102 IPR001623 -
Vifa1g07366 514 SUPERFAMILY Chaperone J-domain 35 108 IPR036869 -
Vifa1g07366 514 ProSiteProfiles dnaJ domain profile. 38 105 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07366 Vifa-Chr1 1135011017 1135017090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07366 40 102 C2H2 Transcription Factor Family AT1G74250 42.424 7.22e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07366 - - gmx:100805332 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07366 1 1135011017 1135017090 Vifa1g07366 1 1135011017 1135017090 ECH