Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07362 ATGAAAGAAGATGCTTCCAATAAACCAAAAGACCAAGTTAGGAGTTCAGGAATGCAGTGGTCATTCTCAAATAAGGTTTCAAACCTTCCTCAATTCTTGTCCTTCAAGAACACTCATGATGATAGGTCAAGAAACATTGTTATGGATCCAATAGCTTCTTTTGAATCTAACAATAAATCATTCTTGAGTGTCACACAGGAAAATGTTACCATAGGAAATAAGCATGGAGTTTATCCTATGCAATGTTCTGATTCACAAACAATTTGCAATCAAGAATCAAGAATATTTTCAGTACCAAACCAATCTAATAATCAAATGTCTTCTGTTCTTCCAACAAATCTTGCTACTACTGGAATTAACATGGTTAATTCGGTTACAAGATCGCAATCTTTCGGTTCTAAATCCTCTGCTACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGCTCTACTGACTTAAGAAATTGTTCCAAATCCAATGGTACTATACCTGCTCAATTGACCATTTTTTATGGTGGTTCAGTATGTGTTTATGATGACATATCTCCTGAGAAGGCTAAGGCTATCATGTTACTAGCTGGAAATGGCACTAAAAAGCAGCCAGAAATGTCTATTCCTTCTAAAAATGATGGTTTCATTATAAGTCAATCCTATCCATCACCATTGCCAAGTCCTCTTCCAATGGCTTCTCATGCAAACTCTCAAACAAGGGGAGGATCAAACAGCAACAATGAAATCACAATTCTAAGATCTTTAGGACCTTCAAATGTCCCAAATAATCATTTAGAATCTTCTATTGTTTCTACTTCTAAAGGACCTGCACCTAAAGAAATGATTCAATCAGTATGCTTGCCTCAAGCGCGAAAAGCATCATTGACTCGGTTTTTGGAGAAGCGAAAGGAAAGGGCAATGAGCACATCACCATACTATATGAACAAGAAATCACATGAAAGCAGCACTCCTGGATCAGATAGCACAAGTTTCTCCATTGATTTTTCTGGTTCAAGTTCTCAACCAGCTACAATCTTAAGAACATCATGTATGGAAGTTTAG 1059 0.3683 MKEDASNKPKDQVRSSGMQWSFSNKVSNLPQFLSFKNTHDDRSRNIVMDPIASFESNNKSFLSVTQENVTIGNKHGVYPMQCSDSQTICNQESRIFSVPNQSNNQMSSVLPTNLATTGINMVNSVTRSQSFGSKSSATPLSVLPSIGSIVGSTDLRNCSKSNGTIPAQLTIFYGGSVCVYDDISPEKAKAIMLLAGNGTKKQPEMSIPSKNDGFIISQSYPSPLPSPLPMASHANSQTRGGSNSNNEITILRSLGPSNVPNNHLESSIVSTSKGPAPKEMIQSVCLPQARKASLTRFLEKRKERAMSTSPYYMNKKSHESSTPGSDSTSFSIDFSGSSSQPATILRTSCMEV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07362 352 MobiDBLite consensus disorder prediction 225 275 - -
Vifa1g07362 352 Pfam tify domain 166 196 IPR010399 -
Vifa1g07362 352 Pfam Jas motif 287 312 IPR018467 -
Vifa1g07362 352 ProSiteProfiles Tify domain profile. 162 197 IPR010399 -
Vifa1g07362 352 SMART tify_2 162 197 IPR010399 -
Vifa1g07362 352 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 74 323 IPR040390 -
Vifa1g07362 352 MobiDBLite consensus disorder prediction 310 340 - -
Vifa1g07362 352 MobiDBLite consensus disorder prediction 304 340 - -
Vifa1g07362 352 MobiDBLite consensus disorder prediction 229 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07362 Vifa-Chr1 1134442841 1134447722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07362 18 317 Tify Gene Family AT3G17860 40.062 4.55e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa1g07362 tify 3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07362 K13464 - gmx:100807288 397.512