Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07361 ATGAAAGAAGATGCTTCCAATAAACCAAAAGACCAAGTTAGGAGTTCAGGAATGCAGTGGTCATTCTCAAATAAGGTTTCAAACCTTCCTCAATTCTTGTCCTTCAAGAACACTCATGATGATAGGTCAAGAAACATTGTTATGGATCCAATAGCTTCTTTTGAATCTAACAATAAATCATTCTTGAGTGTCACACAGGAAAATGTTACCATAGGAAATAAGCATGGAGTTTATCCTATGCAATGTTCTGATTCACAAACAATTTGCAATCAAGAATCAAGAATATTTTCAGTACCAAACCAATCTAATAATCAAATGTCTTCTGTTCTTCCAACAAATCTTGCTACTACTGGAATTAACATGGTTAATTCGGTTACAAGATCGCAATCTTTCGGTTCTAAATCCTCTGCTACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGCTCTACTGACTTAAGGAATAGAAATTGTTCCAAATCCAATGGTACTATACCTGCTCAATTGACCATTTTTTATGGTGGTTCAGTATGTGTTTATGATGACATATCTCCTGAGAAGGCTAAGGCTATCATGTTACTAGCTGGAAATGGCACTAAAAAGCAGCCAGAAATGTCTATTCCTTCTAAAAATGATGGTTTCATTATAAGTCAATCCTATCCATCACCATTGCCAAGTCCTCTTCCAATGGCTTCTCATGCAAACTCTCAAACAAGGGGAGGATCAAACAGCAACAATGAAATCACAATTCTAAGATCTTTAGGACCTTCAAATGTCCCAAATAATCATTTAGAATCTTCTATTGTTTCTACTTCTAAAGGACCTGCACCTAAAGAAATGATTCAATCAGTATGCTTGCCTCAAGCGCGAAAAGCATCATTGACTCGGTTTTTGGAGAAGCGAAAGGAAAGGGCAATGAGCACATCACCATACTATATGAACAAGAAATCACATGAAAGCAGCACTCCTGGATCAGATAGCACAAGTTTCTCCATTGATTTTTCTGGTTCAAGTTCTCAACCAGCTACAATCTTAAGAACATCATGTATGGAAGTTTAG 1065 0.3681 MKEDASNKPKDQVRSSGMQWSFSNKVSNLPQFLSFKNTHDDRSRNIVMDPIASFESNNKSFLSVTQENVTIGNKHGVYPMQCSDSQTICNQESRIFSVPNQSNNQMSSVLPTNLATTGINMVNSVTRSQSFGSKSSATPLSVLPSIGSIVGSTDLRNRNCSKSNGTIPAQLTIFYGGSVCVYDDISPEKAKAIMLLAGNGTKKQPEMSIPSKNDGFIISQSYPSPLPSPLPMASHANSQTRGGSNSNNEITILRSLGPSNVPNNHLESSIVSTSKGPAPKEMIQSVCLPQARKASLTRFLEKRKERAMSTSPYYMNKKSHESSTPGSDSTSFSIDFSGSSSQPATILRTSCMEV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07361 354 MobiDBLite consensus disorder prediction 227 277 - -
Vifa1g07361 354 SMART tify_2 164 199 IPR010399 -
Vifa1g07361 354 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 80 325 IPR040390 -
Vifa1g07361 354 MobiDBLite consensus disorder prediction 312 342 - -
Vifa1g07361 354 ProSiteProfiles Tify domain profile. 164 199 IPR010399 -
Vifa1g07361 354 MobiDBLite consensus disorder prediction 306 342 - -
Vifa1g07361 354 Pfam Jas motif 289 314 IPR018467 -
Vifa1g07361 354 MobiDBLite consensus disorder prediction 231 277 - -
Vifa1g07361 354 Pfam tify domain 168 198 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07361 Vifa-Chr1 1134442841 1134447722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07361 18 319 Tify Gene Family AT3G17860 39.815 2.95e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa1g07361 tify 3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07361 K13464 - gmx:100807288 393.66