Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07335 ATGTCTCATCAACAACCTTTTTTAGAAGACCAAGAAGACGAAACGGCATACGATTCGTCCGACAAAATCGTCATTATCGGAGAAGACGAAGAAGAGTACGAGATTGATATCGACAACGGAGTTCGAACGCCGCCTTTTTCATGGAAGAAGCTGTGGCTATTCAGCGGTCCTGGTTTTCTAATGAGTATAGCGTTTCTGGATCCTGGAAACTTGGAGGGAGATCTTCAATCTGGTGCGATTGCTGGTTACTCGTTGTTGTGGTTGCTTATGTGGGCTACGGCTATGGGGCTTCTTATTCAGCTGTTGTCTGCGAGGTTGGGTGTGGCTACGGGGAGACATTTGGCTGAGCTTTGTAGAGAGGAGTATCCTAGTTGGGCTAGGATTGTTCTTTGGTTGATGACGGAAGTTGCCCTTATTGGTTCGGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATTAGGATTTTGAGTAATGGCTTTGTTCCTCTTTGGGCTGGTGTTGTTATTACTGCTTTAGATTGTTTTATTTTCCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAGGCATTTTTTGCTGTTCTGATTGCTATAATGGCTCTTTCATTTGCATGGATGTTTGGGGAAGCAAAGCCAGATGGTGTCGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTCGGAGTTGTTGGTTGCATTATTATGCCTCACAACGTGTTCTTGCATTCTGCACTTGTTCAATCAAGACGAGTTGACCCGAAAAAGAAAGGCCGTGTTCAAGAAGCTCTTAAATACTACTCAATAGAGTCTACCATTGCGCTTGTTGTCTCCTTTGTCATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTACGGTACCGAAATAGCCAATAGGATCGGTCTTGTAAACGCAGGGCAGTATCTTCAGGAGAAGTATGGAGGCGGAGTATTCCCAATCCTTTACATATGGGCTATCGGGTTATTAGCAGCCGGTCAAAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGTGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACGCGGAGTTTCGCAATCGTTCCAACCATGATAGTTGCTCTTATATTTGATACCTCAGAGGATTCATTAGATGTTCTAAATGAATGGCTTAATGTTCTTCAGTCAGTACAAATCCCCTTCGCATTGATTCCGTTGCTTTGTTTGGTGTCGAAGGAGCAGATAATGGGCACTTTCAAAATCGGCTCTGTCCTCAAGACTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCCTCTGAAGTGAATGGAGCAGTGATCACCGCTGTTGTGAGCGTAATAACAGCTGCGTATGTTGCATTCATAATTTACCTTATTTCAAGCGCCGCTACATTTCCATCATGGCAAAGTTTGACTCGATCAAAGACAGTTACCACCACCACCGAGAGTTGA 1536 0.429 MSHQQPFLEDQEDETAYDSSDKIVIIGEDEEEYEIDIDNGVRTPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCREEYPSWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGFVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRRVDPKKKGRVQEALKYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDTSEDSLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKTISWLVAALVIVINGYLLLEFFSSEVNGAVITAVVSVITAAYVAFIIYLISSAATFPSWQSLTRSKTVTTTTES 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07335 511 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 43 489 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa1g07335 511 NCBIfam Nramp family divalent metal transporter 56 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07335 Vifa-Chr1 1129475818 1129478398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07335 22 496 Inorganic Solute Cotransporters AT2G23150 80.335 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07335 K21398 - gmx:100807811 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07335 1 1129475818 1129478398 Vifa1g07335 1 1129475818 1129478398 ECH