Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07333 ATGGAGGATTCAGCAGCAGCAGCAGCAGCGGCAGCAGCTGTTCCAAAATCTCTGATGGAGAATCTGTTAGGTCTTTTGAGGGTTCGTGTCAAACGTGGTGTTAATCTTGCTGTTCGTGATGTCCGTAGCAGCGATCCTTATCTTGTCATCAAGATGTATAATCAGAAACTCAAGACTCGAGTGATTAAAAGGGATGTTAATCCTGAGTGGAATGAAGATCTTACTCTTTCTGTCATAGATCCTAATCACATCGTTTCAATTACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCGGAATTTGACGTCTCGTCCTATATAGAAGCCTTGAGGATGAACACAACCGGCCTTTCAAACGGCACCGTACTTAAACGAATTCAACCAAGCAAACACAACTGTCTTACTGAGGAGAGCTGTATCTATTACAACAGTGGAAAGATTATCCAAGATATGATTCTTAGATTGCAAAATGTGGAATGTGGTGAAGTTGAAATCAGTTTGCACTGGATTGATCTTCCTGGTTCTAAAGGCTTATGA 552 0.4112 MEDSAAAAAAAAAVPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYLVIKMYNQKLKTRVIKRDVNPEWNEDLTLSVIDPNHIVSITVYDHDTFSKDDKMGDAEFDVSSYIEALRMNTTGLSNGTVLKRIQPSKHNCLTEESCIYYNSGKIIQDMILRLQNVECGEVEISLHWIDLPGSKGL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07333 183 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 21 181 IPR044562 -
Vifa1g07333 183 ProSiteProfiles C2 domain profile. 10 121 IPR000008 -
Vifa1g07333 183 CDD C2_ArfGAP 23 166 - -
Vifa1g07333 183 Pfam C2 domain 24 112 IPR000008 -
Vifa1g07333 183 SMART C2_3c 25 120 IPR000008 -
Vifa1g07333 183 Gene3D C2 domain 20 181 IPR035892 -
Vifa1g07333 183 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 20 109 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07333 Vifa-Chr1 1128701055 1128702269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07333 56 183 C2H2 Transcription Factor Family AT1G70790 56.923 1.43e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07333 - - gmx:100810504 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07333 1 1128701055 1128702269 Vifa1g07333 1 1128701055 1128702269 ECH
Vifa1g07333 1 1128701055 1128702269 Vifa1g07333 1 1128701055 1128702269 PCT