Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07316 ATGGGTGGACCCGTCGGAAATCCTGAAAGCATGTCTAAAGCATGGAGAAGTCTTAGTTATAGTCTGAAAACAACTCTTGGTAGCATGGTTTTGCCACTTGGTTCTTTGACTATTGGATTAGCTCGGCATCGTGCATTGTTATTTAAGGTTCTAGCTGATAGATTGACAATTCCATCGCGGTTGGTGAAAGGACAACAATATACAGGTTCTGATGACGTGGCAATAAACTTTGTCAAGATTGATGGAAGGGAGTATATTGTTGATCTAATGGCAGATCCTGGAACTCTTATTCCATCTGATGCTATTGGATCACATATTGTGTATGATGAATCCGTTTTTGAAGCAAGCCCTTCATCAAGAGAGGTTGATTCTTCTCGCGTAGCATCATCAAGCAGTGGAGTTGGAAGTTCGTCGGAAGAAGCTTCAGATGTTGGAATGTCAGGCAGGGGAAACAGATCAAAACATCACCATGTTAAGAAGGTCAATTCATATGTGCACTTGAGATCATCTTCATGGAGTGAAGGGATCAGTTCCTCTGTCGTAAACCGAATGAAAGCCAAAAATGTTTCGCAATTTATGATCGAAACTACCAAGGAAAATCCTCACTTAGCTAAAAAACTTCATGATGTTTTACTCGAAAGTGGTATTGTTCCTCCTCCAAATTTATTTTCGAACATTTATCACGAAGACACTCTTTTCTCAAACGAAGTAAAAAATGAACACAAACAAGGAAGTGAACATCAGGAAGTGGAATTCAACGATAGTCTCAGTCCTGCTAGATTTAAGCCCGTAGAAGGTTTAGGAGCCAATCTTCCTCTTCATACAAGAGAAGGTGTTGGAAACATTTTACCGACTCAGGTAAAACATGGGAAAAAGGTGCCATCTGCTGCAGCGGCAGCCGCAGCGGCTGCAGTTGTTGCATCTTCTATGGTAGTAGCCGTGGCAAGGTCAAACACTGACTCCAACATCGAGCTTTCAGTCTCGGCAGCTGCTACTGCTGCAGCTGTAGTAGCAGCTACTGCTGCAGTTAGCAAGTATGAGCCGAGCAGTCGAAGCGACGCGGATACCGAAGGTTCTGGAACGAATTTGGGAAGATCCGGAAGCTCAGTTGTAAGTAATGACAGTATAAAATCTGATTTTTCTTTAGACGAAGTTGCTGAGTATGAAATTCCGTGGGAGGAAATCACACTCGGTGAACGTATTGGACTTGGATCTTACGGGGAGGTGTATCGCGGTGAATGGCGAGGAACCGAAGTTGCTGTAAAGAGGTTTCTAAATCAAGATATATCCGGTGAAACACTTGAAGAATTCATCAGTGAGGTCAGAATAATGAAAAGATTGAGGCATCCAAATGTGGTTCTCTTCATGGGAGCTGTAATTCGACCTCCAAATCTTTCAATCGTTACTGAATTTCTACCAAGAGGAAGTTTGTATAGATTAATTCACCGGCCAAACAATCAATTAGATGAACGGAGACGTTTGAGAATGGCGCTTGATACTGCTCGAGGAATGAACTATTTGCACAACTGTAGTCCAGTGATAGTACATCGCGATTTGAAGTCTCCGAATCTTCTTGTTGATAAAAATTGGGTTGTAAAGGTGTGTGATTTTGGCTTATCACGTATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGCACAGCCGAGTGGATGGCTCCCGAGATGTTGAGAAATGAACCGTCAAATGAAAAGTGTGATGTCTATAGCTTTGGGGTCATATTATGGGAACTATCTACTTTGCAGCAGCCTTGGAGAGGAATGAATTCCATGCAAGTTGTTGGTGCCGTGGGTTTCCAATATCGCCGTCTTGACATTCCCGACGACATGGATCCTGCCATCGCAGATATTATCAGAAAATGCTGGCAGACAGATTCAAAAGCAAGACCTACATTTGCTGAGATATTGGCAGCTCTAAAGCCATTACAGAAGCCAATTACGGGTTCTCAAGTGCCTCGACCGACTGCGTCCGGTAGGCACAGGAAGGATCAATCATCTGCTTCCGAAAGATAG 2037 0.432 MGGPVGNPESMSKAWRSLSYSLKTTLGSMVLPLGSLTIGLARHRALLFKVLADRLTIPSRLVKGQQYTGSDDVAINFVKIDGREYIVDLMADPGTLIPSDAIGSHIVYDESVFEASPSSREVDSSRVASSSSGVGSSSEEASDVGMSGRGNRSKHHHVKKVNSYVHLRSSSWSEGISSSVVNRMKAKNVSQFMIETTKENPHLAKKLHDVLLESGIVPPPNLFSNIYHEDTLFSNEVKNEHKQGSEHQEVEFNDSLSPARFKPVEGLGANLPLHTREGVGNILPTQVKHGKKVPSAAAAAAAAAVVASSMVVAVARSNTDSNIELSVSAAATAAAVVAATAAVSKYEPSSRSDADTEGSGTNLGRSGSSVVSNDSIKSDFSLDEVAEYEIPWEEITLGERIGLGSYGEVYRGEWRGTEVAVKRFLNQDISGETLEEFISEVRIMKRLRHPNVVLFMGAVIRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDTARGMNYLHNCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEMLRNEPSNEKCDVYSFGVILWELSTLQQPWRGMNSMQVVGAVGFQYRRLDIPDDMDPAIADIIRKCWQTDSKARPTFAEILAALKPLQKPITGSQVPRPTASGRHRKDQSSASER 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07316 678 MobiDBLite consensus disorder prediction 652 678 - -
Vifa1g07316 678 Pfam Ethylene-responsive protein kinase Le-CTR1 1 97 - -
Vifa1g07316 678 ProSitePatterns Protein kinases ATP-binding region signature. 401 422 IPR017441 GO:0005524
Vifa1g07316 678 MobiDBLite consensus disorder prediction 119 144 - -
Vifa1g07316 678 Gene3D Transferase(Phosphotransferase) domain 1 474 657 - -
Vifa1g07316 678 MobiDBLite consensus disorder prediction 119 157 - -
Vifa1g07316 678 SUPERFAMILY Protein kinase-like (PK-like) 375 646 IPR011009 -
Vifa1g07316 678 CDD STKc_MAP3K-like 401 647 - -
Vifa1g07316 678 MobiDBLite consensus disorder prediction 664 678 - -
Vifa1g07316 678 FunFam Serine/threonine-protein kinase CTR1 474 657 - -
Vifa1g07316 678 Gene3D Phosphorylase Kinase; domain 1 388 472 - -
Vifa1g07316 678 FunFam Serine/threonine-protein kinase isoform 1 386 473 - -
Vifa1g07316 678 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 132 652 - -
Vifa1g07316 678 Pfam Protein tyrosine and serine/threonine kinase 395 646 IPR001245 GO:0004672|GO:0006468
Vifa1g07316 678 SMART serkin_6 395 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07316 678 MobiDBLite consensus disorder prediction 346 372 - -
Vifa1g07316 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Vifa1g07316 678 ProSiteProfiles Protein kinase domain profile. 395 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07316 678 PRINTS Tyrosine kinase catalytic domain signature 574 596 IPR001245 GO:0004672|GO:0006468
Vifa1g07316 678 PRINTS Tyrosine kinase catalytic domain signature 618 640 IPR001245 GO:0004672|GO:0006468
Vifa1g07316 678 PRINTS Tyrosine kinase catalytic domain signature 555 565 IPR001245 GO:0004672|GO:0006468
Vifa1g07316 678 PRINTS Tyrosine kinase catalytic domain signature 469 482 IPR001245 GO:0004672|GO:0006468
Vifa1g07316 678 PRINTS Tyrosine kinase catalytic domain signature 508 526 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07316 Vifa-Chr1 1126416094 1126419681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07316 1 665 MAP Kinase Kinase Kinase AT1G73660 59.592 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa1g07316 PK_Tyr_Ser-Thr 8.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07316 - - psat:127107393 1180.24