Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07289 ATGAGCACTTTCTTTCTCATACTCATTTCTCTCTTTTTCCTTATCATCACATTGAAGTTCTTCTTCTGCACAACAACAAGGTTCAACAACCTTCCACCAGGCCCTCCTTTTCTTCCTATAATTGGAAACCTTCATCTACTCAAACAACCACTCCACCGCACTTTCCAAACCTTATCACAAAAACATGGCCAAATCTTTTCTCTCTGGTTCGGTTCTCGTCTCGTCATTGTTGTTTCTTCGTTAACAGCAGCACAAGAATGTTTTACCAAACACGACATCGTTTTAGCGAACCGTCCTCATTTCTTAACCGGCAAATATATTGCCTACAACAACACTACAGTAGCACAAGCACCTTACGGTGACCATTGGCGCAATCTCCGCCGGATAATATCAACTGAGGTACTCTCATCTCACCGTTTAAATACCTTCTTGGAAATACGAAGAGACGAGATTATGAGACTGATTCAAAAGCTAGCACAAGTTTGTCACAATGGTTTCTCAGAAGTGGAACTTAAGCCATTGTTTTCAGAAATGACATTCAACACCATCATGATAATGGTGTGTGGGAAAAGATACTATGGTGATGATCTTGACGTGAGTGATGTTGAGGAAGCAAAGTTGTTTAGAGACATAATCAAAGAGATCGTGGTTTTAAGAGGAGCTAACAACGTTGGTGATTTTCTAGGGTTTGTAAGGTGGTTTGATTTTGATGGTTTAGAGAAGAGGCTTAAGAGGATAAGTAAGAAAGCAGATTCATTTTTACAAGGACTCATTGATGAACGTAGATTTGGAAAGAGGAACACTGATACTATGATTGATCATCTCTTGAAACAGCAACAATCACAACCTGAATACTACACTGATCAAATCATCAAAGGATTTATTGTGGTTATGTTACTTGCAGGAACCGACACATCATCTTTAACCTTAGAATGGACTATGGCAAATTTATTAAATAATCCAAATATATTAAAGAAGGCAAAAGATGAATTAGAAACTCACATGGGACAAGATTACTTGATAGATGAACATAATATTTCCAAACTTCCTTATCTTCAAAGTATTGTTCATGAGACTCTTCGATTACATCCAGCTGCTCCATTATTATTGCCTCATTTGTCTTCGGAAGAGTTTACATTAAAAGAATATATTATCCCACAAAATACAATTGTAATGGTAAATGCTTGGGTCATTCACAGAGATCCAAATTTGTGGACTGATCCTACATGTTTTAAGCCCGAGAGATTTGAGAAAAAAGGTGAGACAAATAAATTACTTTCATTTGGAATGGGAAGAAGGGCTTGTCCGGGAACAAATTTGGCTCAACGTACAATGATCATAACTTTAGGGTTATTGATTCAGTGTTTTGAGTGGGAACGTATAAGTAAAGAAAAAATTGATATGACCGAAGGAAAAGGAATCACGGTGGGGAAAAAAAATTCTTTAAAAGTAATGTGCAAATTGCGCCATCCACTAAAGATTAAAGATACTTCTTAA 1497 0.3694 MSTFFLILISLFFLIITLKFFFCTTTRFNNLPPGPPFLPIIGNLHLLKQPLHRTFQTLSQKHGQIFSLWFGSRLVIVVSSLTAAQECFTKHDIVLANRPHFLTGKYIAYNNTTVAQAPYGDHWRNLRRIISTEVLSSHRLNTFLEIRRDEIMRLIQKLAQVCHNGFSEVELKPLFSEMTFNTIMIMVCGKRYYGDDLDVSDVEEAKLFRDIIKEIVVLRGANNVGDFLGFVRWFDFDGLEKRLKRISKKADSFLQGLIDERRFGKRNTDTMIDHLLKQQQSQPEYYTDQIIKGFIVVMLLAGTDTSSLTLEWTMANLLNNPNILKKAKDELETHMGQDYLIDEHNISKLPYLQSIVHETLRLHPAAPLLLPHLSSEEFTLKEYIIPQNTIVMVNAWVIHRDPNLWTDPTCFKPERFEKKGETNKLLSFGMGRRACPGTNLAQRTMIITLGLLIQCFEWERISKEKIDMTEGKGITVGKKNSLKVMCKLRHPLKIKDTS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07289 498 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 SUPERFAMILY Cytochrome P450 32 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PANTHER CYTOCHROME P450 82C3-RELATED 13 491 - -
Vifa1g07289 498 Pfam Cytochrome P450 32 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Vifa1g07289 498 FunFam Cytochrome P450 family protein 23 492 - -
Vifa1g07289 498 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 Gene3D Cytochrome P450 23 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07289 498 CDD CYP81 63 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07289 Vifa-Chr1 1126019081 1126020974 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07289 7 489 Cytochrome P450 AT4G37370 53.086 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07289 K13260 - gmx:100811727 706.827