Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07287 ATGGAATTCAACTTTCTTATCTACATCATTTTCCCTCTCCTTGTTCTCATCACAACAAAACTATTACTATTCTCCACAAAAGCATTCAAAAATCTTCCACAAAACCCACCCTCTCTTCCCATAATTGGCAACCTCCATCAAATTAAACAACCAATTCATCACTACTTTCACAACCTCTCCCAAAAATATGGCCCAATCTTCACCCTTAAATTCGGTTCTCGACTCGTAGCTGTTGTTTCATCTCCATCTCTAGCCGAAGAATGTTTCACCAAACACGACATCGTTTTCGCAAACCGTATACAGTCTCTCAAAACCAAGTATCTTGCTTTCAACAACACAAACATAGTAACATCATCGTATGGAGACCATTGGCGCAACCTACGTCGTATAAGCTCAATCGAAATCCTCTCCAATCAGCGCCTTAACTCCTTCTCAGATATCCGAAAAGACGAAACCATGAGGCTAATCCAAAAGCTTGCTGAAAATTCTCAAAATAATTTCGCGAAAGTTGAGCTTAGAACTTTGTTTTCTGAACTAACATTTAACATCATCATGAGAATGGTTTGTGGTAAACGGTTTTACGGTGATGAATCTGATGAGGCAAAGAAGTTTAGAGATATCATGAACGAGATGCAACAGTTTGGGCTAGGGTCCAACCTTGGTGAATTTGTGCCTTTATTTAGATTGTTTGATTTTAGTAGTCATGAAAACAAGTTGAAAAAGGTTGGGGAAAAGATGGATGCACTTTTTCAAGGACTAGTTGATGAACATCGTAGGGACAGAAACGAAAATAAGAATACAATGATTGATCATCTACTTTCTTTGCAACAATCACAACCTGATTATTACAGTGACCAAATTATCAAAGGCCTTATTATGGCATTGATAGTTGCGGGAACAGAAACTTCGTCAATAACGTTAGAGTGGGCTATGGCTAATTTATTAAACCATCCAGAAATATTGAAAAAAGCAAAAATTGAAATGGAGAATCACATTGGAGAAGAGAGGTTAATTGAGGAAGGTGAAGCTACGAAATTACAATATCTTCAAAACATCATCTCCGAGACTCTACGGTTACATCCAGCAGCACCAATGTTGTTGCCACATGTATCATCAGAAGATTGTACTGTGGGAGGATTTGATGTGCCACAAAACACCATGTTGATGGTGAATGCGTGGGCTATTCATAGGGATTCTGATTTATGGGCTGACCCAACGAGTTTTAAGCCCGAGAGGTTTGAGGGTAATCGACAAGCGGACACGCATGGGTTTATGCCTTTTGGAATGGGGAGAAGGGCTTGTCCTGGATCGGGCTTAGCTTTAAGAACTTTGAGCTTGACTTTGGGCTCGTTGATCCAATGCTTTGAGTGGAAAAGGATTGGTGAAGAAGAAGTTGACATGAATGAAGGACGTGGAACTCTTGTGCCTATGGCTGTTCCATTGGAAGCACAGTGCAAAGCTCGTCCAATAATCAATCAAATGTTCTCTTAA 1491 0.3984 MEFNFLIYIIFPLLVLITTKLLLFSTKAFKNLPQNPPSLPIIGNLHQIKQPIHHYFHNLSQKYGPIFTLKFGSRLVAVVSSPSLAEECFTKHDIVFANRIQSLKTKYLAFNNTNIVTSSYGDHWRNLRRISSIEILSNQRLNSFSDIRKDETMRLIQKLAENSQNNFAKVELRTLFSELTFNIIMRMVCGKRFYGDESDEAKKFRDIMNEMQQFGLGSNLGEFVPLFRLFDFSSHENKLKKVGEKMDALFQGLVDEHRRDRNENKNTMIDHLLSLQQSQPDYYSDQIIKGLIMALIVAGTETSSITLEWAMANLLNHPEILKKAKIEMENHIGEERLIEEGEATKLQYLQNIISETLRLHPAAPMLLPHVSSEDCTVGGFDVPQNTMLMVNAWAIHRDSDLWADPTSFKPERFEGNRQADTHGFMPFGMGRRACPGSGLALRTLSLTLGSLIQCFEWKRIGEEEVDMNEGRGTLVPMAVPLEAQCKARPIINQMFS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07287 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Vifa1g07287 496 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 SUPERFAMILY Cytochrome P450 35 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 FunFam Cytochrome P450 family protein 24 491 - -
Vifa1g07287 496 Pfam Cytochrome P450 33 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g07287 496 PANTHER CYTOCHROME P450 82C3-RELATED 16 488 - -
Vifa1g07287 496 CDD CYP81 64 481 - -
Vifa1g07287 496 Gene3D Cytochrome P450 25 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07287 Vifa-Chr1 1125335877 1125337484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07287 1 496 Cytochrome P450 AT4G37370 53.785 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07287 K13260 - gmx:100804509 681.789