Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07284 ATGAACACAGCAATAACCAGAAAAGAAATGGATCGGATCAAAGGTCCATGGAGTCCTGAAGAGGACGAAGCTCTGCAAAAGCTTGTGGAGAAGCACGGTCCGAGAAACTGGTCGATAATCAGCAAATCGATTCCGGGACGATCCGGGAAATCATGTCGTCTGCGTTGGTGTAATCAGCTCTCTCCTCAGGTTGAGCATCGGGCTTTTTCCCCAGAAGAGGATGATACTATAATCAGAGCCCATGCCCGATTCGGAAACAAATGGGCTACCATAGCCCGCCTTCTGTCGGGTCGAACCGACAACGCGATTAAGAATCACTGGAACTCTACTTTGAAACGCAAGTGTTCTTCTATTATGATCGATGAATCTCCACCGTTGAAAAGATCTGTAAGTGCCGGTGCTGCTATACCTGTTTGTAATGGGATTTACAAGAACCCTCCCACTCCGGGAAGTCCTTCTGGATCCGATGTGAGCGAGTCCAGTGTACCTATCGTGAACTCTTCTCATATTTACCGTCCTGTCCCTACAAGAACCGTTGCGGCTCTACCTCTCGTAGAATCGAAAACGACGTCGTCTTCCAAATCCAACGATCCTCCAACTTCACTTTCGTTATCACTTCCTGGTATCGATTCTTCTTCTGAAGATTCAAATCGTGTTACTGAGCCTGTTACTACTGTACCGCCGCCTCCTCCACCGCCAACTGCGATTCCGTTGGTTCCGATAATGACTGCACCGATTCCGATGGCGGTTCCGATGCAGACGCAGCAAGGATCGGTTATGCCGTTCAATTTCAGCGCAGAGTTATTGTCAGTGATGCAGGAAATGATAAGGACGGAGGTGAGAAGCTACATGGCGGGTTTGGAGCAGCAGAATGGGATTTGTATTTCCGATGATGGATACAGGAATGCTTCGGTGAAGCGAATGGGAATTAGCAGGATCGATTCGTAA 948 0.4842 MNTAITRKEMDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFSPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDESPPLKRSVSAGAAIPVCNGIYKNPPTPGSPSGSDVSESSVPIVNSSHIYRPVPTRTVAALPLVESKTTSSSKSNDPPTSLSLSLPGIDSSSEDSNRVTEPVTTVPPPPPPPTAIPLVPIMTAPIPMAVPMQTQQGSVMPFNFSAELLSVMQEMIRTEVRSYMAGLEQQNGICISDDGYRNASVKRMGISRIDS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07284 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Vifa1g07284 315 Pfam Myb-like DNA-binding domain 17 75 - -
Vifa1g07284 315 SMART sant 13 62 IPR001005 -
Vifa1g07284 315 SMART sant 65 113 IPR001005 -
Vifa1g07284 315 CDD SANT 68 111 IPR001005 -
Vifa1g07284 315 MobiDBLite consensus disorder prediction 187 222 - -
Vifa1g07284 315 FunFam MYB transcription factor 14 65 - -
Vifa1g07284 315 Gene3D - 67 129 - -
Vifa1g07284 315 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Vifa1g07284 315 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vifa1g07284 315 MobiDBLite consensus disorder prediction 187 232 - -
Vifa1g07284 315 Gene3D - 13 65 - -
Vifa1g07284 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Vifa1g07284 315 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vifa1g07284 315 FunFam Transcription factor MYB44 68 114 - -
Vifa1g07284 315 CDD SANT 16 58 IPR001005 -
Vifa1g07284 315 PANTHER MYB PROTEIN-RELATED 14 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07284 Vifa-Chr1 1124412670 1124413617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07284 6 291 MYB Transcription Factor Family AT4G37260 54.605 1.69e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g07284 Myb_DNA-bind_6 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07284 K09422 - gmx:780556 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07284 1 1124412670 1124413617 Vifa4g02665 4 824025358 824026350 ECH
Vifa1g07284 1 1124412670 1124413617 Vifa1g07284 1 1124412670 1124413617 ECH
Vifa4g02665 4 824025358 824026350 Vifa1g07284 1 1124412670 1124413617 PCT